Wall clock time and date at job start Mon Mar 30 2020 01:42:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.34329 * 125.30802 * 2 1 4 4 C 1.46966 * 106.48894 * 180.26154 * 3 2 1 5 5 C 1.41351 * 127.10979 * 180.02562 * 4 3 2 6 6 H 1.08000 * 119.99868 * 0.02562 * 5 4 3 7 7 C 1.39676 * 120.00081 * 179.97438 * 5 4 3 8 8 N 1.31049 * 120.00161 * 0.02562 * 7 5 4 9 9 Si 1.86804 * 119.99768 * 180.02562 * 7 5 4 10 10 H 1.48501 * 109.47308 * 0.02562 * 9 7 5 11 11 H 1.48503 * 109.46840 * 120.00360 * 9 7 5 12 12 H 1.48501 * 109.46789 * 240.00088 * 9 7 5 13 13 C 1.39262 * 105.78153 * 359.97438 * 4 3 2 14 14 N 1.34915 * 107.92511 * 0.02562 * 13 4 3 15 15 H 0.96998 * 124.79446 * 179.97438 * 14 13 4 16 16 H 1.08997 * 109.47244 * 269.72263 * 1 2 3 17 17 H 1.08994 * 109.47194 * 29.72459 * 1 2 3 18 18 H 1.08997 * 109.46942 * 149.72390 * 1 2 3 19 19 H 1.08004 * 126.75094 * 0.22545 * 3 2 1 20 20 H 0.96993 * 120.00433 * 179.97438 * 8 7 5 21 21 H 1.07994 * 126.03999 * 180.02562 * 13 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2833 1.0962 0.0000 4 6 3.6744 0.6221 -0.0064 5 6 4.8453 1.4140 -0.0082 6 1 4.7686 2.4913 -0.0042 7 6 6.1015 0.8033 -0.0140 8 7 6.1945 -0.5039 -0.0184 9 14 7.6488 1.8499 -0.0156 10 1 7.2744 3.2869 -0.0094 11 1 8.4548 1.5435 1.1934 12 1 8.4471 1.5511 -1.2316 13 6 3.6006 -0.7685 -0.0092 14 7 2.2968 -1.1152 -0.0055 15 1 1.9665 -2.0272 -0.0067 16 1 -0.3633 -0.0050 1.0276 17 1 -0.3633 0.8924 -0.5095 18 1 -0.3633 -0.8875 -0.5181 19 1 1.9507 2.1237 0.0034 20 1 7.0668 -0.9280 -0.0228 21 1 4.4390 -1.4493 -0.0136 RHF calculation, no. of doubly occupied orbitals= 27 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000037624460.mol2 21 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:42:44 Heat of formation + Delta-G solvation = 7.715934 kcal Electronic energy + Delta-G solvation = -7591.669242 eV Core-core repulsion = 6045.890248 eV Total energy + Delta-G solvation = -1545.778994 eV No. of doubly occupied orbitals = 27 Molecular weight (most abundant/longest-lived isotopes) = 151.069 amu Computer time = 0.09 seconds Orbital eigenvalues (eV) -40.83734 -35.34903 -31.87698 -31.38865 -27.63364 -25.52370 -21.27495 -20.51861 -18.10939 -17.64723 -16.16473 -14.90087 -14.34469 -14.27783 -13.69062 -13.13413 -13.07020 -12.79190 -12.77776 -12.40274 -11.56679 -11.46742 -11.14272 -9.19554 -8.40429 -8.30684 -5.98457 1.37763 1.41395 1.56818 1.97618 2.35116 2.39365 3.14945 3.65525 4.44522 4.66236 4.92526 5.08775 5.18495 5.31874 5.43437 5.69347 6.08575 6.23638 6.57114 6.98204 7.25771 7.39257 7.57771 8.69865 Molecular weight = 151.07amu Principal moments of inertia in cm(-1) A = 0.137999 B = 0.016427 C = 0.014797 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 202.850746 B = 1704.132888 C = 1891.839208 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 C -0.001 4.001 3 C -0.295 4.295 4 C -0.041 4.041 5 C -0.470 4.470 6 H 0.057 0.943 7 C 0.008 3.992 8 N -0.870 5.870 9 Si 0.987 3.013 10 H -0.265 1.265 11 H -0.270 1.270 12 H -0.270 1.270 13 C -0.134 4.134 14 N -0.563 5.563 15 H 0.407 0.593 16 H 0.074 0.926 17 H 0.079 0.921 18 H 0.075 0.925 19 H 0.115 0.885 20 H 0.274 0.726 21 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.849 -0.787 -0.007 4.912 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.114 4.114 3 C -0.324 4.324 4 C -0.047 4.047 5 C -0.505 4.505 6 H 0.076 0.924 7 C -0.197 4.197 8 N -0.503 5.503 9 Si 0.810 3.190 10 H -0.189 1.189 11 H -0.195 1.195 12 H -0.195 1.195 13 C -0.262 4.262 14 N -0.162 5.162 15 H 0.242 0.758 16 H 0.092 0.908 17 H 0.098 0.902 18 H 0.094 0.906 19 H 0.133 0.867 20 H 0.085 0.915 21 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges -4.683 -1.070 -0.009 4.804 hybrid contribution 0.780 0.050 0.007 0.782 sum -3.903 -1.020 -0.002 4.034 Atomic orbital electron populations 1.20260 0.86027 1.03433 1.02720 1.20512 0.94260 0.86409 1.10237 1.21810 0.93440 0.96795 1.20321 1.18989 0.92125 0.92472 1.01083 1.19102 0.91075 0.93432 1.46849 0.92428 1.26503 1.03111 0.96401 0.93660 1.69617 1.25832 1.10801 1.44062 0.85066 0.76891 0.78681 0.78371 1.18887 1.19511 1.19495 1.22933 0.84698 0.97030 1.21512 1.41317 1.05808 1.07163 1.61882 0.75764 0.90753 0.90205 0.90644 0.86688 0.91540 0.81391 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.99 10.40 71.23 0.74 -1.24 14 2 C 0.00 -0.05 7.10 40.91 0.29 0.24 14 3 C -0.30 -15.48 10.97 23.67 0.26 -15.22 14 4 C -0.04 -2.48 6.12 -19.98 -0.12 -2.60 14 5 C -0.47 -28.80 9.44 23.38 0.22 -28.58 14 6 H 0.06 3.44 7.84 -2.91 -0.02 3.42 14 7 C 0.01 0.48 5.49 85.16 0.47 0.95 14 8 N -0.87 -50.04 10.38 21.79 0.23 -49.82 14 9 Si 0.99 43.39 29.56 68.60 2.03 45.42 14 10 H -0.26 -11.40 7.11 99.48 0.71 -10.69 14 11 H -0.27 -11.33 7.11 99.48 0.71 -10.62 14 12 H -0.27 -11.31 7.11 99.48 0.71 -10.61 14 13 C -0.13 -7.50 10.94 84.47 0.92 -6.57 14 14 N -0.56 -25.49 5.91 -180.65 -1.07 -26.56 14 15 H 0.41 14.67 8.96 -92.71 -0.83 13.83 14 16 H 0.07 1.96 8.14 -2.39 -0.02 1.94 14 17 H 0.08 2.17 8.14 -2.39 -0.02 2.15 14 18 H 0.07 1.85 8.14 -2.39 -0.02 1.83 14 19 H 0.12 5.63 8.06 -2.91 -0.02 5.61 14 20 H 0.27 14.37 8.30 -92.71 -0.77 13.60 14 21 H 0.17 9.85 5.78 -2.91 -0.02 9.84 14 Total: -1.00 -68.06 191.01 4.37 -63.70 By element: Atomic # 1 Polarization: 19.90 SS G_CDS: 0.40 Total: 20.30 kcal Atomic # 6 Polarization: -55.81 SS G_CDS: 2.78 Total: -53.03 kcal Atomic # 7 Polarization: -75.54 SS G_CDS: -0.84 Total: -76.38 kcal Atomic # 14 Polarization: 43.39 SS G_CDS: 2.03 Total: 45.42 kcal Total: -68.06 4.37 -63.70 kcal The number of atoms in the molecule is 21 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000037624460.mol2 21 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.413 kcal (2) G-P(sol) polarization free energy of solvation -68.063 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.350 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.366 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.697 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.716 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.09 seconds