Wall clock time and date at job start Mon Mar 30 2020 01:43:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.36640 * 124.79202 * 2 1 4 4 C 1.34329 * 109.39353 * 179.97438 * 3 2 1 5 5 C 1.46973 * 106.48247 * 359.97438 * 4 3 2 6 6 C 1.41355 * 127.10801 * 179.97438 * 5 4 3 7 7 H 1.08000 * 119.99435 * 180.02562 * 6 5 4 8 8 C 1.39671 * 120.00054 * 0.02562 * 6 5 4 9 9 N 1.31050 * 120.00194 * 0.02562 * 8 6 5 10 10 Si 1.86800 * 120.00135 * 179.97438 * 8 6 5 11 11 H 1.48507 * 109.46713 * 89.99964 * 10 8 6 12 12 H 1.48497 * 109.47424 * 210.00224 * 10 8 6 13 13 H 1.48503 * 109.46966 * 330.00597 * 10 8 6 14 14 C 1.34918 * 124.78807 * 180.28034 * 2 1 3 15 15 H 1.08999 * 109.46678 * 90.03360 * 1 2 3 16 16 H 1.09003 * 109.47080 * 210.02697 * 1 2 3 17 17 H 1.09000 * 109.47183 * 330.03081 * 1 2 3 18 18 H 1.08000 * 125.30950 * 359.96879 * 3 2 1 19 19 H 1.07998 * 126.75746 * 180.02562 * 4 3 2 20 20 H 0.96998 * 120.00171 * 180.02562 * 9 8 6 21 21 H 1.08003 * 126.03870 * 0.03607 * 14 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2447 1.1221 0.0000 4 6 3.5398 0.7654 0.0006 5 6 3.5676 -0.7040 0.0016 6 6 4.7108 -1.5354 0.0019 7 1 4.5974 -2.6094 0.0023 8 6 5.9870 -0.9678 0.0018 9 7 6.1246 0.3354 0.0019 10 14 7.4978 -2.0664 0.0030 11 1 7.8984 -2.3585 -1.3968 12 1 8.6111 -1.3765 0.7028 13 1 7.1848 -3.3377 0.7038 14 6 2.2348 -1.1080 -0.0054 15 1 -0.3633 -0.0006 -1.0277 16 1 -0.3633 -0.8898 0.5143 17 1 -0.3633 0.8903 0.5133 18 1 1.8771 2.1376 -0.0005 19 1 4.3926 1.4280 0.0011 20 1 7.0109 0.7296 0.0015 21 1 1.8801 -2.1281 -0.0110 RHF calculation, no. of doubly occupied orbitals= 27 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000039073434.mol2 21 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:43:26 Heat of formation + Delta-G solvation = 23.968719 kcal Electronic energy + Delta-G solvation = -7608.113194 eV Core-core repulsion = 6063.038974 eV Total energy + Delta-G solvation = -1545.074220 eV No. of doubly occupied orbitals = 27 Molecular weight (most abundant/longest-lived isotopes) = 151.069 amu Computer time = 0.09 seconds Orbital eigenvalues (eV) -40.83088 -35.43740 -32.61239 -29.91116 -27.73075 -25.48909 -21.10923 -20.22548 -18.74738 -17.07723 -16.27515 -15.54874 -14.60481 -14.25099 -13.47888 -13.13294 -13.03541 -12.63195 -12.59999 -12.59122 -11.72177 -11.32128 -11.07446 -8.91732 -8.61683 -8.25718 -5.94213 1.37348 1.41962 1.56061 1.91665 2.35376 2.52043 2.79610 3.68189 4.30157 4.53030 4.61055 4.75886 4.79109 5.39410 5.50179 5.81152 6.03722 6.36673 6.58667 7.01727 7.19954 7.33843 7.40917 8.71501 Molecular weight = 151.07amu Principal moments of inertia in cm(-1) A = 0.137439 B = 0.016600 C = 0.014930 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 203.677754 B = 1686.379026 C = 1874.911087 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.080 3.920 2 N -0.464 5.464 3 C -0.042 4.042 4 C -0.247 4.247 5 C -0.019 4.019 6 C -0.485 4.485 7 H 0.061 0.939 8 C 0.018 3.982 9 N -0.861 5.861 10 Si 0.985 3.015 11 H -0.267 1.267 12 H -0.271 1.271 13 H -0.263 1.263 14 C -0.185 4.185 15 H 0.068 0.932 16 H 0.081 0.919 17 H 0.092 0.908 18 H 0.170 0.830 19 H 0.133 0.867 20 H 0.273 0.727 21 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.300 -0.135 0.082 5.303 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 N -0.144 5.144 3 C -0.172 4.172 4 C -0.275 4.275 5 C -0.025 4.025 6 C -0.519 4.519 7 H 0.079 0.921 8 C -0.190 4.190 9 N -0.492 5.492 10 Si 0.807 3.193 11 H -0.192 1.192 12 H -0.196 1.196 13 H -0.187 1.187 14 C -0.311 4.311 15 H 0.086 0.914 16 H 0.100 0.900 17 H 0.110 0.890 18 H 0.188 0.812 19 H 0.151 0.849 20 H 0.083 0.917 21 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -5.523 -0.009 0.091 5.524 hybrid contribution 0.739 -0.389 -0.030 0.836 sum -4.784 -0.398 0.061 4.801 Atomic orbital electron populations 1.21988 0.76876 1.04388 1.02869 1.43163 1.06236 1.04799 1.60229 1.21830 0.91004 0.91243 1.13079 1.22596 0.95367 0.95739 1.13803 1.19062 0.91747 0.93075 0.98654 1.19047 0.91182 0.93346 1.48295 0.92118 1.26593 1.02967 0.96649 0.92782 1.69921 1.24559 1.12206 1.42498 0.85173 0.76678 0.78513 0.78937 1.19214 1.19590 1.18731 1.21704 0.90521 0.90462 1.28418 0.91366 0.90049 0.88972 0.81236 0.84946 0.91696 0.83887 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 2.35 11.03 127.77 1.41 3.76 14 2 N -0.46 -20.61 3.10 -545.22 -1.69 -22.29 14 3 C -0.04 -2.00 11.30 83.05 0.94 -1.07 14 4 C -0.25 -14.15 9.88 23.67 0.23 -13.92 14 5 C -0.02 -1.13 6.10 -19.97 -0.12 -1.26 14 6 C -0.48 -29.53 9.40 23.38 0.22 -29.31 14 7 H 0.06 3.55 7.84 -2.91 -0.02 3.53 14 8 C 0.02 1.02 5.49 85.16 0.47 1.49 14 9 N -0.86 -50.40 10.42 21.79 0.23 -50.17 14 10 Si 0.98 43.19 29.56 68.60 2.03 45.22 14 11 H -0.27 -11.26 7.11 99.48 0.71 -10.55 14 12 H -0.27 -11.28 7.11 99.48 0.71 -10.58 14 13 H -0.26 -11.20 7.11 99.48 0.71 -10.49 14 14 C -0.19 -9.65 11.44 84.47 0.97 -8.69 14 15 H 0.07 1.78 8.14 -2.39 -0.02 1.76 14 16 H 0.08 2.13 8.13 -2.39 -0.02 2.11 14 17 H 0.09 2.20 8.13 -2.39 -0.02 2.18 14 18 H 0.17 6.42 8.06 -2.91 -0.02 6.40 14 19 H 0.13 7.99 6.03 -2.91 -0.02 7.98 14 20 H 0.27 14.58 8.30 -92.71 -0.77 13.81 14 21 H 0.14 6.81 8.06 -2.91 -0.02 6.79 14 Total: -1.00 -69.18 191.73 5.89 -63.29 By element: Atomic # 1 Polarization: 11.73 SS G_CDS: 1.21 Total: 12.93 kcal Atomic # 6 Polarization: -53.10 SS G_CDS: 4.11 Total: -48.99 kcal Atomic # 7 Polarization: -71.00 SS G_CDS: -1.46 Total: -72.46 kcal Atomic # 14 Polarization: 43.19 SS G_CDS: 2.03 Total: 45.22 kcal Total: -69.18 5.89 -63.29 kcal The number of atoms in the molecule is 21 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000039073434.mol2 21 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.264 kcal (2) G-P(sol) polarization free energy of solvation -69.181 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.082 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.886 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.295 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.969 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.09 seconds