Wall clock time and date at job start Mon Mar 30 2020 01:53:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31352 * 1 3 3 Si 1.86802 * 119.99874 * 2 1 4 4 H 1.48501 * 109.47303 * 240.00025 * 3 2 1 5 5 H 1.48497 * 109.47238 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47253 * 120.00297 * 3 2 1 7 7 C 1.39076 * 120.00038 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99848 * 186.83371 * 7 2 1 9 9 N 1.36815 * 119.99978 * 6.82514 * 7 2 1 10 10 C 1.46883 * 126.32307 * 354.36561 * 9 7 2 11 11 C 1.51108 * 105.81151 * 179.97438 * 10 9 7 12 12 C 1.33051 * 106.99055 * 0.02562 * 11 10 9 13 13 C 1.34618 * 126.32159 * 174.34329 * 9 7 2 14 14 O 1.21659 * 124.97937 * 0.04537 * 13 9 7 15 15 H 0.96996 * 119.99604 * 0.02562 * 1 2 3 16 16 H 1.08995 * 110.17912 * 299.06958 * 10 9 7 17 17 H 1.09003 * 110.17381 * 60.81970 * 10 9 7 18 18 H 1.08004 * 126.50512 * 180.02562 * 11 10 9 19 19 H 1.07994 * 125.10159 * 180.26335 * 12 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3135 0.0000 0.0000 3 14 2.2475 1.6178 0.0000 4 1 3.1013 1.6965 -1.2125 5 1 1.2825 2.7465 -0.0006 6 1 3.1013 1.6965 1.2124 7 6 2.0089 -1.2044 -0.0005 8 1 3.0832 -1.2078 0.1108 9 7 1.3321 -2.3850 -0.1419 10 6 -0.1266 -2.5518 -0.1861 11 6 -0.3666 -4.0343 -0.3534 12 6 0.8277 -4.6191 -0.3959 13 6 1.8801 -3.6083 -0.2665 14 8 3.0743 -3.8405 -0.2703 15 1 -0.4849 0.8400 -0.0004 16 1 -0.5735 -2.2009 0.7440 17 1 -0.5420 -2.0046 -1.0324 18 1 -1.3256 -4.5258 -0.4248 19 1 0.9961 -5.6794 -0.5134 RHF calculation, no. of doubly occupied orbitals= 27 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000039073552.mol2 19 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:53:11 Heat of formation + Delta-G solvation = -23.344579 kcal Electronic energy + Delta-G solvation = -7976.345177 eV Core-core repulsion = 6266.074725 eV Total energy + Delta-G solvation = -1710.270452 eV No. of doubly occupied orbitals = 27 Molecular weight (most abundant/longest-lived isotopes) = 153.053 amu Computer time = 0.07 seconds Orbital eigenvalues (eV) -41.19086 -37.03903 -35.23372 -32.35760 -27.69812 -27.08678 -22.23218 -20.69472 -19.19913 -17.28217 -16.36797 -16.26962 -15.54297 -14.72305 -14.26319 -13.80320 -13.66654 -12.97209 -12.59168 -12.35051 -12.14315 -11.47023 -10.46157 -10.24146 -9.96333 -8.54255 -6.06356 0.62124 1.38378 1.42576 1.50182 2.19885 2.39412 3.07172 3.13146 3.88510 3.97685 4.78629 4.93411 4.95476 5.20481 5.30947 5.69266 5.78110 6.38967 7.04896 7.14419 7.98273 8.52795 Molecular weight = 153.05amu Principal moments of inertia in cm(-1) A = 0.089030 B = 0.021621 C = 0.017581 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 314.424294 B = 1294.755844 C = 1592.258513 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.887 5.887 2 C 0.000 4.000 3 Si 1.004 2.996 4 H -0.272 1.272 5 H -0.260 1.260 6 H -0.269 1.269 7 C -0.341 4.341 8 H 0.080 0.920 9 N -0.450 5.450 10 C 0.129 3.871 11 C -0.112 4.112 12 C -0.219 4.219 13 C 0.412 3.588 14 O -0.662 6.662 15 H 0.284 0.716 16 H 0.094 0.906 17 H 0.097 0.903 18 H 0.207 0.793 19 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.857 -0.541 -0.473 5.901 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.525 5.525 2 C -0.203 4.203 3 Si 0.825 3.175 4 H -0.197 1.197 5 H -0.184 1.184 6 H -0.194 1.194 7 C -0.467 4.467 8 H 0.098 0.902 9 N -0.164 5.164 10 C 0.007 3.993 11 C -0.134 4.134 12 C -0.240 4.240 13 C 0.207 3.793 14 O -0.556 6.556 15 H 0.094 0.906 16 H 0.111 0.889 17 H 0.114 0.886 18 H 0.224 0.776 19 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges -5.418 -0.328 -0.447 5.446 hybrid contribution 0.597 0.722 0.054 0.939 sum -4.820 0.394 -0.394 4.852 Atomic orbital electron populations 1.69888 1.06693 1.29748 1.46143 1.26214 0.96884 1.02391 0.94826 0.84845 0.77894 0.75602 0.79124 1.19701 1.18426 1.19402 1.19651 0.92792 0.83214 1.51089 0.90218 1.44226 1.07730 1.05787 1.58646 1.21071 0.80726 0.93943 1.03557 1.24959 0.99583 0.94068 0.94768 1.23188 0.93447 0.99888 1.07472 1.19725 0.89300 0.84956 0.85368 1.90516 1.18682 1.84319 1.62058 0.90617 0.88851 0.88571 0.77590 0.81644 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -45.05 10.48 21.69 0.23 -44.83 13 2 C 0.00 -0.01 5.48 84.97 0.47 0.46 13 3 Si 1.00 41.37 29.56 68.60 2.03 43.40 13 4 H -0.27 -11.22 7.11 99.48 0.71 -10.52 13 5 H -0.26 -9.81 7.11 99.48 0.71 -9.11 13 6 H -0.27 -10.98 7.11 99.48 0.71 -10.28 13 7 C -0.34 -20.03 10.03 84.12 0.84 -19.18 13 8 H 0.08 4.94 7.80 -2.91 -0.02 4.92 13 9 N -0.45 -25.12 3.10 -643.00 -1.99 -27.11 13 10 C 0.13 5.78 5.47 85.69 0.47 6.25 13 11 C -0.11 -3.78 11.21 24.65 0.28 -3.50 13 12 C -0.22 -8.91 10.83 23.26 0.25 -8.65 13 13 C 0.41 23.01 7.90 86.42 0.68 23.70 13 14 O -0.66 -42.63 17.77 -4.22 -0.07 -42.70 13 15 H 0.28 13.24 8.31 -92.71 -0.77 12.47 13 16 H 0.09 4.25 7.65 -2.39 -0.02 4.23 13 17 H 0.10 4.39 7.40 -2.39 -0.02 4.38 13 18 H 0.21 4.38 8.06 -2.91 -0.02 4.36 13 19 H 0.17 5.55 8.06 -2.91 -0.02 5.53 13 Total: -1.00 -70.62 180.41 4.42 -66.19 By element: Atomic # 1 Polarization: 4.74 SS G_CDS: 1.25 Total: 5.99 kcal Atomic # 6 Polarization: -3.93 SS G_CDS: 2.99 Total: -0.94 kcal Atomic # 7 Polarization: -70.17 SS G_CDS: -1.76 Total: -71.93 kcal Atomic # 8 Polarization: -42.63 SS G_CDS: -0.07 Total: -42.70 kcal Atomic # 14 Polarization: 41.37 SS G_CDS: 2.03 Total: 43.40 kcal Total: -70.62 4.42 -66.19 kcal The number of atoms in the molecule is 19 The average number of expansion shells was 13.00 The maximum number of expansion shells was 13 The minimum number of expansion shells was 13 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000039073552.mol2 19 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.848 kcal (2) G-P(sol) polarization free energy of solvation -70.616 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.768 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.424 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.192 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.345 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.08 seconds