Wall clock time and date at job start Mon Mar 30 2020 02:16:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.36273 * 125.83431 * 2 1 4 4 N 1.28246 * 114.59017 * 179.97438 * 3 2 1 5 5 C 1.46974 * 110.19045 * 359.97438 * 4 3 2 6 6 H 1.08994 * 110.55557 * 241.27533 * 5 4 3 7 7 C 1.50697 * 110.55537 * 118.58394 * 5 4 3 8 8 H 1.08002 * 120.00599 * 243.42397 * 7 5 4 9 9 C 1.37880 * 119.99675 * 63.41930 * 7 5 4 10 10 N 1.31517 * 120.00210 * 179.97438 * 9 7 5 11 11 Si 1.86800 * 120.00019 * 0.02562 * 9 7 5 12 12 H 1.48503 * 109.46845 * 269.99914 * 11 9 7 13 13 H 1.48503 * 109.47399 * 29.99403 * 11 9 7 14 14 H 1.48498 * 109.47295 * 150.00010 * 11 9 7 15 15 C 1.47629 * 125.79949 * 179.90032 * 2 1 3 16 16 H 1.08997 * 109.47007 * 359.97438 * 1 2 3 17 17 H 1.09003 * 109.46911 * 119.97975 * 1 2 3 18 18 H 1.08996 * 109.47465 * 239.97564 * 1 2 3 19 19 H 1.08008 * 122.70864 * 0.02562 * 3 2 1 20 20 H 0.96998 * 119.99640 * 180.02562 * 10 9 7 21 21 H 1.09003 * 110.74676 * 61.64336 * 15 2 1 22 22 H 1.09004 * 110.80724 * 298.32168 * 15 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2628 1.1048 0.0000 4 7 3.5207 0.8547 0.0005 5 6 3.7492 -0.5971 0.0016 6 1 4.2930 -0.8983 0.8969 7 6 4.4988 -1.0157 -1.2369 8 1 4.0334 -1.6781 -1.9519 9 6 5.7787 -0.5529 -1.4575 10 7 6.4331 -0.9186 -2.5381 11 14 6.5839 0.5922 -0.2207 12 1 6.2795 2.0008 -0.5792 13 1 6.0582 0.3025 1.1376 14 1 8.0541 0.3839 -0.2373 15 6 2.3286 -1.1974 0.0021 16 1 -0.3633 1.0276 0.0005 17 1 -0.3633 -0.5135 -0.8902 18 1 -0.3634 -0.5142 0.8897 19 1 1.8678 2.1100 0.0004 20 1 7.3337 -0.5932 -2.6930 21 1 2.1618 -1.7953 -0.8939 22 1 2.1630 -1.7926 0.9001 RHF calculation, no. of doubly occupied orbitals= 28 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000039073688.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:16:48 Heat of formation + Delta-G solvation = 40.845987 kcal Electronic energy + Delta-G solvation = -8231.852688 eV Core-core repulsion = 6594.772932 eV Total energy + Delta-G solvation = -1637.079756 eV No. of doubly occupied orbitals = 28 Molecular weight (most abundant/longest-lived isotopes) = 154.080 amu Computer time = 0.08 seconds Orbital eigenvalues (eV) -38.91835 -33.06567 -31.79373 -29.30897 -26.40692 -24.05279 -20.39585 -19.57677 -16.78260 -15.86212 -14.66784 -14.01357 -13.47916 -12.75590 -12.57018 -12.18331 -11.68947 -11.32550 -10.69395 -10.51450 -10.11529 -9.73679 -9.39424 -8.73951 -8.36831 -6.91288 -5.98069 -4.04694 3.54233 3.62138 3.65488 3.76040 3.93738 4.67671 5.25328 5.39501 5.60158 5.69640 5.86369 5.88263 6.16579 6.46868 6.88276 7.06830 7.39436 7.76212 8.37924 8.54629 8.89574 9.12029 9.66342 11.12371 Molecular weight = 154.08amu Principal moments of inertia in cm(-1) A = 0.092213 B = 0.019873 C = 0.017789 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 303.572363 B = 1408.597918 C = 1573.649170 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.119 3.881 2 N -0.664 5.664 3 C 0.310 3.690 4 N -0.557 5.557 5 C 0.145 3.855 6 H 0.053 0.947 7 C -0.513 4.513 8 H 0.073 0.927 9 C 0.081 3.919 10 N -0.902 5.902 11 Si 0.920 3.080 12 H -0.275 1.275 13 H -0.271 1.271 14 H -0.308 1.308 15 C 0.096 3.904 16 H 0.066 0.934 17 H 0.045 0.955 18 H 0.043 0.957 19 H 0.164 0.836 20 H 0.263 0.737 21 H 0.065 0.935 22 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.642 2.496 5.784 11.518 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.025 4.025 2 N -0.391 5.391 3 C 0.011 3.989 4 N -0.281 5.281 5 C 0.037 3.963 6 H 0.070 0.930 7 C -0.551 4.551 8 H 0.091 0.909 9 C -0.123 4.123 10 N -0.540 5.540 11 Si 0.750 3.250 12 H -0.201 1.201 13 H -0.196 1.196 14 H -0.237 1.237 15 C -0.028 4.028 16 H 0.085 0.915 17 H 0.064 0.936 18 H 0.062 0.938 19 H 0.181 0.819 20 H 0.073 0.927 21 H 0.083 0.917 22 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -8.655 2.844 5.691 10.742 hybrid contribution -0.306 0.046 0.411 0.515 sum -8.962 2.890 6.102 11.221 Atomic orbital electron populations 1.21181 0.79683 1.01501 1.00136 1.48162 1.04600 1.06073 1.80242 1.24244 0.88461 0.91912 0.94246 1.73956 1.13631 1.18417 1.22113 1.20771 0.91536 0.85010 0.98979 0.92976 1.20890 0.99042 1.29725 1.05473 0.90903 1.24984 0.96889 0.95057 0.95365 1.69946 1.12480 1.44846 1.26707 0.86122 0.75062 0.81797 0.82011 1.20076 1.19560 1.23659 1.22677 0.92539 0.87860 0.99752 0.91510 0.93648 0.93819 0.81912 0.92723 0.91658 0.93479 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.12 1.54 11.30 59.85 0.68 2.22 14 2 N -0.66 -12.27 3.45 -182.76 -0.63 -12.90 14 3 C 0.31 6.19 12.13 -91.08 -1.10 5.08 14 4 N -0.56 -13.85 9.19 -56.41 -0.52 -14.37 14 5 C 0.14 3.72 2.97 -68.19 -0.20 3.52 14 6 H 0.05 1.37 7.19 -51.93 -0.37 1.00 14 7 C -0.51 -15.35 9.37 -34.44 -0.32 -15.67 14 8 H 0.07 2.31 7.63 -52.49 -0.40 1.91 14 9 C 0.08 2.48 5.47 -17.82 -0.10 2.38 14 10 N -0.90 -28.89 13.96 55.43 0.77 -28.12 14 11 Si 0.92 24.95 26.31 -169.99 -4.47 20.47 14 12 H -0.28 -7.53 7.11 56.52 0.40 -7.12 14 13 H -0.27 -7.20 6.53 56.52 0.37 -6.83 14 14 H -0.31 -8.17 7.11 56.52 0.40 -7.77 14 15 C 0.10 2.02 7.43 -2.78 -0.02 2.00 14 16 H 0.07 0.69 8.07 -51.93 -0.42 0.28 14 17 H 0.04 0.56 8.14 -51.93 -0.42 0.14 14 18 H 0.04 0.50 8.14 -51.93 -0.42 0.08 14 19 H 0.16 2.51 8.06 -52.48 -0.42 2.09 14 20 H 0.26 7.91 8.31 -40.82 -0.34 7.57 14 21 H 0.07 1.42 7.47 -51.93 -0.39 1.04 14 22 H 0.05 0.89 8.14 -51.93 -0.42 0.47 14 LS Contribution 193.46 15.07 2.92 2.92 Total: -1.00 -34.18 193.46 -5.44 -39.62 By element: Atomic # 1 Polarization: -4.71 SS G_CDS: -2.44 Total: -7.15 kcal Atomic # 6 Polarization: 0.60 SS G_CDS: -1.07 Total: -0.47 kcal Atomic # 7 Polarization: -55.01 SS G_CDS: -0.37 Total: -55.39 kcal Atomic # 14 Polarization: 24.95 SS G_CDS: -4.47 Total: 20.47 kcal Total LS contribution 2.92 Total: 2.92 kcal Total: -34.18 -5.44 -39.62 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000039073688.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.465 kcal (2) G-P(sol) polarization free energy of solvation -34.177 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.288 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.442 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.619 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.846 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.08 seconds