Wall clock time and date at job start Mon Mar 30 2020 02:16:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.36273 * 125.83431 * 2 1 4 4 N 1.28246 * 114.59017 * 179.97438 * 3 2 1 5 5 C 1.46974 * 110.19045 * 359.97438 * 4 3 2 6 6 H 1.08994 * 110.55557 * 241.27533 * 5 4 3 7 7 C 1.50697 * 110.55537 * 118.58394 * 5 4 3 8 8 H 1.08002 * 120.00599 * 243.42397 * 7 5 4 9 9 C 1.37880 * 119.99675 * 63.41930 * 7 5 4 10 10 N 1.31517 * 120.00210 * 179.97438 * 9 7 5 11 11 Si 1.86800 * 120.00019 * 0.02562 * 9 7 5 12 12 H 1.48503 * 109.46845 * 269.99914 * 11 9 7 13 13 H 1.48503 * 109.47399 * 29.99403 * 11 9 7 14 14 H 1.48498 * 109.47295 * 150.00010 * 11 9 7 15 15 C 1.47629 * 125.79949 * 179.90032 * 2 1 3 16 16 H 1.08997 * 109.47007 * 359.97438 * 1 2 3 17 17 H 1.09003 * 109.46911 * 119.97975 * 1 2 3 18 18 H 1.08996 * 109.47465 * 239.97564 * 1 2 3 19 19 H 1.08008 * 122.70864 * 0.02562 * 3 2 1 20 20 H 0.96998 * 119.99640 * 180.02562 * 10 9 7 21 21 H 1.09003 * 110.74676 * 61.64336 * 15 2 1 22 22 H 1.09004 * 110.80724 * 298.32168 * 15 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2628 1.1048 0.0000 4 7 3.5207 0.8547 0.0005 5 6 3.7492 -0.5971 0.0016 6 1 4.2930 -0.8983 0.8969 7 6 4.4988 -1.0157 -1.2369 8 1 4.0334 -1.6781 -1.9519 9 6 5.7787 -0.5529 -1.4575 10 7 6.4331 -0.9186 -2.5381 11 14 6.5839 0.5922 -0.2207 12 1 6.2795 2.0008 -0.5792 13 1 6.0582 0.3025 1.1376 14 1 8.0541 0.3839 -0.2373 15 6 2.3286 -1.1974 0.0021 16 1 -0.3633 1.0276 0.0005 17 1 -0.3633 -0.5135 -0.8902 18 1 -0.3634 -0.5142 0.8897 19 1 1.8678 2.1100 0.0004 20 1 7.3337 -0.5932 -2.6930 21 1 2.1618 -1.7953 -0.8939 22 1 2.1630 -1.7926 0.9001 RHF calculation, no. of doubly occupied orbitals= 28 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000039073688.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:16:48 Heat of formation + Delta-G solvation = 15.609714 kcal Electronic energy + Delta-G solvation = -8232.947015 eV Core-core repulsion = 6594.772932 eV Total energy + Delta-G solvation = -1638.174083 eV No. of doubly occupied orbitals = 28 Molecular weight (most abundant/longest-lived isotopes) = 154.080 amu Computer time = 0.09 seconds Orbital eigenvalues (eV) -40.56861 -35.05421 -33.58802 -31.17385 -27.97349 -25.85559 -22.22211 -21.25260 -18.95716 -17.38499 -16.51867 -15.83029 -14.98128 -14.81662 -14.11536 -13.98220 -13.09449 -12.83772 -12.61045 -12.47695 -12.13054 -11.77774 -11.40165 -10.88195 -10.32128 -8.54050 -8.32338 -6.41643 1.38690 1.48506 1.60858 2.05182 2.45190 2.52443 3.06105 4.00960 4.11876 4.38241 4.43229 4.75003 4.81627 4.96564 5.07295 5.37818 5.54360 5.79176 6.15607 6.61451 6.97977 7.29316 7.47666 8.81927 Molecular weight = 154.08amu Principal moments of inertia in cm(-1) A = 0.092213 B = 0.019873 C = 0.017789 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 303.572363 B = 1408.597918 C = 1573.649170 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.112 3.888 2 N -0.660 5.660 3 C 0.330 3.670 4 N -0.619 5.619 5 C 0.141 3.859 6 H 0.040 0.960 7 C -0.518 4.518 8 H 0.035 0.965 9 C 0.026 3.974 10 N -0.948 5.948 11 Si 0.987 3.013 12 H -0.277 1.277 13 H -0.264 1.264 14 H -0.302 1.302 15 C 0.099 3.901 16 H 0.100 0.900 17 H 0.050 0.950 18 H 0.063 0.937 19 H 0.215 0.785 20 H 0.266 0.734 21 H 0.051 0.949 22 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.460 3.763 7.215 14.055 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.030 4.030 2 N -0.385 5.385 3 C 0.033 3.967 4 N -0.346 5.346 5 C 0.032 3.968 6 H 0.058 0.942 7 C -0.556 4.556 8 H 0.054 0.946 9 C -0.173 4.173 10 N -0.588 5.588 11 Si 0.814 3.186 12 H -0.203 1.203 13 H -0.189 1.189 14 H -0.230 1.230 15 C -0.026 4.026 16 H 0.119 0.881 17 H 0.068 0.932 18 H 0.082 0.918 19 H 0.231 0.769 20 H 0.075 0.925 21 H 0.069 0.931 22 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -10.545 4.097 7.129 13.372 hybrid contribution 0.061 -0.387 -0.065 0.397 sum -10.484 3.710 7.065 13.176 Atomic orbital electron populations 1.21555 0.75871 1.04203 1.01345 1.48388 1.06733 1.04540 1.78888 1.25062 0.87497 0.94069 0.90096 1.73825 1.16533 1.16811 1.27435 1.20540 0.93371 0.86945 0.95909 0.94241 1.21212 0.99492 1.28588 1.06321 0.94643 1.25813 0.97711 0.96729 0.97061 1.70063 1.13138 1.46808 1.28762 0.85078 0.74174 0.79364 0.79942 1.20309 1.18887 1.23025 1.22451 0.90909 0.88872 1.00327 0.88147 0.93156 0.91795 0.76923 0.92489 0.93092 0.90860 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 2.35 11.30 127.77 1.44 3.79 14 2 N -0.66 -22.00 3.45 -732.12 -2.52 -24.53 14 3 C 0.33 11.97 12.13 180.51 2.19 14.16 14 4 N -0.62 -29.63 9.19 -332.36 -3.05 -32.69 14 5 C 0.14 7.18 2.97 44.57 0.13 7.31 14 6 H 0.04 2.07 7.19 -2.39 -0.02 2.06 14 7 C -0.52 -31.73 9.37 25.60 0.24 -31.49 14 8 H 0.04 2.35 7.63 -2.91 -0.02 2.33 14 9 C 0.03 1.60 5.47 84.65 0.46 2.06 14 10 N -0.95 -62.35 13.96 21.45 0.30 -62.05 14 11 Si 0.99 52.31 26.31 68.60 1.80 54.11 14 12 H -0.28 -14.66 7.11 99.48 0.71 -13.95 14 13 H -0.26 -13.57 6.53 99.48 0.65 -12.92 14 14 H -0.30 -15.44 7.11 99.48 0.71 -14.73 14 15 C 0.10 4.05 7.43 86.58 0.64 4.69 14 16 H 0.10 1.48 8.07 -2.39 -0.02 1.46 14 17 H 0.05 1.04 8.14 -2.39 -0.02 1.02 14 18 H 0.06 1.14 8.14 -2.39 -0.02 1.12 14 19 H 0.21 5.38 8.06 -2.91 -0.02 5.36 14 20 H 0.27 16.38 8.31 -92.71 -0.77 15.61 14 21 H 0.05 2.21 7.47 -2.39 -0.02 2.19 14 22 H 0.07 2.60 8.14 -2.38 -0.02 2.58 14 Total: -1.00 -75.26 193.46 2.77 -72.49 By element: Atomic # 1 Polarization: -9.00 SS G_CDS: 1.13 Total: -7.87 kcal Atomic # 6 Polarization: -4.59 SS G_CDS: 5.11 Total: 0.53 kcal Atomic # 7 Polarization: -113.98 SS G_CDS: -5.28 Total: -119.26 kcal Atomic # 14 Polarization: 52.31 SS G_CDS: 1.80 Total: 54.11 kcal Total: -75.26 2.77 -72.49 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000039073688.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.100 kcal (2) G-P(sol) polarization free energy of solvation -75.263 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.837 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.772 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.491 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.610 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.09 seconds