Wall clock time and date at job start Mon Mar 30 2020 02:16:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86803 * 120.00112 * 2 1 4 4 H 1.48500 * 109.46986 * 270.00107 * 3 2 1 5 5 H 1.48496 * 109.47029 * 30.00124 * 3 2 1 6 6 H 1.48499 * 109.47352 * 149.99954 * 3 2 1 7 7 C 1.37885 * 120.00035 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99675 * 179.72276 * 7 2 1 9 9 C 1.50695 * 119.99721 * 0.02562 * 7 2 1 10 10 C 1.53004 * 109.46637 * 179.97438 * 9 7 2 11 11 C 1.54266 * 110.03317 * 292.90757 * 10 9 7 12 12 C 1.54970 * 104.15727 * 217.13857 * 11 10 9 13 13 C 1.54888 * 102.77784 * 37.89213 * 12 11 10 14 14 C 1.53883 * 110.03029 * 175.69198 * 10 9 7 15 15 H 0.97000 * 119.99706 * 359.97438 * 1 2 3 16 16 H 1.08992 * 109.47177 * 299.99952 * 9 7 2 17 17 H 1.08997 * 109.47039 * 60.00401 * 9 7 2 18 18 H 1.09001 * 110.01738 * 54.30329 * 10 9 7 19 19 H 1.08997 * 110.49062 * 335.78426 * 11 10 9 20 20 H 1.08996 * 110.48466 * 98.42891 * 11 10 9 21 21 H 1.09001 * 110.72045 * 279.57254 * 12 11 10 22 22 H 1.08998 * 110.91863 * 156.29939 * 12 11 10 23 23 H 1.09003 * 110.47848 * 203.40424 * 13 12 11 24 24 H 1.08995 * 110.60287 * 80.81834 * 13 12 11 25 25 H 1.08993 * 110.02795 * 238.57040 * 14 10 9 26 26 H 1.08994 * 110.02997 * 359.95231 * 14 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4467 2.6526 0.7000 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1941 0.0005 8 1 3.0846 -1.1941 -0.0040 9 6 1.2510 -2.4991 0.0005 10 6 2.2454 -3.6621 0.0005 11 6 3.0176 -3.6971 -1.3345 12 6 3.1821 -5.2079 -1.6376 13 6 1.8320 -5.8013 -1.1642 14 6 1.4921 -4.9995 0.1091 15 1 -0.4850 0.8401 0.0004 16 1 0.6241 -2.5567 0.8902 17 1 0.6248 -2.5571 -0.8897 18 1 2.9420 -3.5573 0.8323 19 1 2.4412 -3.2108 -2.1215 20 1 3.9918 -3.2210 -1.2242 21 1 4.0102 -5.6279 -1.0667 22 1 3.3255 -5.3774 -2.7048 23 1 1.9420 -6.8603 -0.9302 24 1 1.0626 -5.6571 -1.9226 25 1 1.8240 -5.5441 0.9930 26 1 0.4184 -4.8200 0.1627 RHF calculation, no. of doubly occupied orbitals= 29 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000039411189.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:16:56 Heat of formation + Delta-G solvation = -35.786946 kcal Electronic energy + Delta-G solvation = -8330.227051 eV Core-core repulsion = 6793.364585 eV Total energy + Delta-G solvation = -1536.862466 eV No. of doubly occupied orbitals = 29 Molecular weight (most abundant/longest-lived isotopes) = 154.105 amu Computer time = 0.09 seconds Orbital eigenvalues (eV) -37.51927 -32.91863 -30.00473 -28.00204 -25.63703 -22.16175 -20.03998 -18.53508 -16.33532 -14.86701 -14.60000 -14.05284 -12.72661 -12.68434 -12.13829 -11.35391 -11.11535 -10.76751 -10.54839 -10.41989 -10.32906 -10.11643 -10.02328 -9.46820 -9.00656 -8.87690 -8.28257 -5.93639 -3.94978 3.35122 3.41195 3.44801 4.50923 5.30153 5.36416 5.42001 5.43035 6.05660 6.16599 6.22931 6.29310 6.33937 6.48567 6.54370 6.73047 6.84191 7.05300 7.14161 7.34838 7.75561 7.92842 8.07535 8.51824 9.12165 9.68443 11.17747 Molecular weight = 154.11amu Principal moments of inertia in cm(-1) A = 0.098609 B = 0.014405 C = 0.013285 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 283.881119 B = 1943.349365 C = 2107.193811 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.054 3.946 3 Si 0.889 3.111 4 H -0.281 1.281 5 H -0.287 1.287 6 H -0.274 1.274 7 C -0.514 4.514 8 H 0.054 0.946 9 C 0.028 3.972 10 C -0.087 4.087 11 C -0.105 4.105 12 C -0.128 4.128 13 C -0.122 4.122 14 C -0.123 4.123 15 H 0.259 0.741 16 H 0.013 0.987 17 H 0.016 0.984 18 H 0.054 0.946 19 H 0.066 0.934 20 H 0.054 0.946 21 H 0.056 0.944 22 H 0.054 0.946 23 H 0.051 0.949 24 H 0.060 0.940 25 H 0.048 0.952 26 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.020 -7.254 -1.735 8.473 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.146 4.146 3 Si 0.718 3.282 4 H -0.207 1.207 5 H -0.213 1.213 6 H -0.199 1.199 7 C -0.552 4.552 8 H 0.073 0.927 9 C -0.009 4.009 10 C -0.106 4.106 11 C -0.143 4.143 12 C -0.166 4.166 13 C -0.160 4.160 14 C -0.160 4.160 15 H 0.069 0.931 16 H 0.032 0.968 17 H 0.034 0.966 18 H 0.073 0.927 19 H 0.085 0.915 20 H 0.073 0.927 21 H 0.075 0.925 22 H 0.073 0.927 23 H 0.070 0.930 24 H 0.079 0.921 25 H 0.067 0.933 26 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 3.866 -7.133 -1.725 8.294 hybrid contribution 0.403 1.005 0.021 1.083 sum 4.269 -6.128 -1.704 7.660 Atomic orbital electron populations 1.69970 1.06030 1.26413 1.51336 1.25037 0.94822 0.99166 0.95599 0.86635 0.79871 0.83711 0.78032 1.20746 1.21302 1.19941 1.21292 0.93005 0.91095 1.49814 0.92742 1.19223 0.93534 0.91147 0.96955 1.21832 0.97747 0.94746 0.96248 1.22313 0.99855 0.93655 0.98470 1.22563 0.96952 0.97540 0.99544 1.22325 0.97394 0.98112 0.98136 1.22277 1.00731 0.96648 0.96381 0.93130 0.96828 0.96579 0.92709 0.91511 0.92722 0.92482 0.92693 0.92977 0.92127 0.93269 0.92086 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.53 13.29 55.43 0.74 -26.80 15 2 C 0.05 1.59 5.46 -17.82 -0.10 1.49 15 3 Si 0.89 22.06 29.54 -169.99 -5.02 17.04 15 4 H -0.28 -6.87 7.11 56.52 0.40 -6.47 15 5 H -0.29 -7.05 7.11 56.52 0.40 -6.65 15 6 H -0.27 -6.67 7.11 56.52 0.40 -6.27 15 7 C -0.51 -14.80 8.67 -34.44 -0.30 -15.10 15 8 H 0.05 1.53 7.69 -52.48 -0.40 1.13 15 9 C 0.03 0.75 4.10 -27.88 -0.11 0.64 15 10 C -0.09 -1.88 2.88 -89.50 -0.26 -2.13 15 11 C -0.11 -2.06 5.87 -25.03 -0.15 -2.21 15 12 C -0.13 -2.04 6.91 -24.70 -0.17 -2.21 15 13 C -0.12 -1.93 6.83 -25.07 -0.17 -2.11 15 14 C -0.12 -2.24 6.46 -25.61 -0.17 -2.41 15 15 H 0.26 7.49 8.31 -40.82 -0.34 7.15 15 16 H 0.01 0.38 8.14 -51.93 -0.42 -0.04 15 17 H 0.02 0.45 8.02 -51.93 -0.42 0.03 15 18 H 0.05 1.19 8.14 -51.93 -0.42 0.77 15 19 H 0.07 1.40 7.77 -51.93 -0.40 1.00 15 20 H 0.05 1.05 8.14 -51.93 -0.42 0.63 15 21 H 0.06 0.84 8.14 -51.93 -0.42 0.42 15 22 H 0.05 0.79 8.14 -51.93 -0.42 0.36 15 23 H 0.05 0.71 8.14 -51.93 -0.42 0.29 15 24 H 0.06 0.95 8.14 -51.93 -0.42 0.53 15 25 H 0.05 0.82 8.14 -51.93 -0.42 0.39 15 26 H 0.06 1.15 7.67 -51.93 -0.40 0.76 15 LS Contribution 215.93 15.07 3.25 3.25 Total: -1.00 -29.92 215.93 -6.59 -36.51 By element: Atomic # 1 Polarization: -1.82 SS G_CDS: -4.14 Total: -5.96 kcal Atomic # 6 Polarization: -22.62 SS G_CDS: -1.42 Total: -24.04 kcal Atomic # 7 Polarization: -27.53 SS G_CDS: 0.74 Total: -26.80 kcal Atomic # 14 Polarization: 22.06 SS G_CDS: -5.02 Total: 17.04 kcal Total LS contribution 3.25 Total: 3.25 kcal Total: -29.92 -6.59 -36.51 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000039411189.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.722 kcal (2) G-P(sol) polarization free energy of solvation -29.917 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.195 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.592 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.509 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.787 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.09 seconds