Wall clock time and date at job start Mon Mar 30 2020 01:45:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 N 1.30319 * 125.97062 * 2 1 4 4 N 1.39885 * 109.22810 * 179.97438 * 3 2 1 5 5 H 0.97001 * 125.67365 * 179.97438 * 4 3 2 6 6 C 1.34500 * 108.64612 * 0.24692 * 4 3 2 7 7 C 1.39283 * 107.19009 * 359.61427 * 6 4 3 8 8 C 1.41592 * 126.55667 * 180.14637 * 7 6 4 9 9 H 1.08004 * 119.99680 * 180.27510 * 8 7 6 10 10 C 1.39694 * 120.00567 * 0.28198 * 8 7 6 11 11 N 1.31027 * 119.99625 * 359.97438 * 10 8 7 12 12 Si 1.86797 * 120.00195 * 180.02562 * 10 8 7 13 13 H 1.48494 * 109.47062 * 59.99718 * 12 10 8 14 14 H 1.48497 * 109.46847 * 179.97438 * 12 10 8 15 15 H 1.48498 * 109.47032 * 299.99755 * 12 10 8 16 16 H 1.08996 * 109.47405 * 90.02266 * 1 2 3 17 17 H 1.09000 * 109.46529 * 210.02393 * 1 2 3 18 18 H 1.08998 * 109.47007 * 330.02387 * 1 2 3 19 19 H 1.08000 * 126.40446 * 179.72444 * 6 4 3 20 20 H 0.97000 * 120.00425 * 180.02562 * 11 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2725 1.0547 0.0000 4 7 3.6120 0.6517 0.0006 5 1 4.3807 1.2434 0.0004 6 6 3.6567 -0.6925 -0.0045 7 6 2.3405 -1.1482 0.0006 8 6 1.9157 -2.4988 0.0007 9 1 0.8614 -2.7332 0.0005 10 6 2.8600 -3.5282 0.0014 11 7 4.1390 -3.2438 0.0013 12 14 2.2994 -5.3101 0.0009 13 1 1.4839 -5.5721 -1.2122 14 1 3.4863 -6.2024 0.0011 15 1 1.4822 -5.5722 1.2128 16 1 -0.3634 -0.0004 -1.0276 17 1 -0.3632 -0.8898 0.5142 18 1 -0.3633 0.8902 0.5135 19 1 4.5468 -1.3042 -0.0096 20 1 4.7949 -3.9585 0.0014 RHF calculation, no. of doubly occupied orbitals= 27 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000044368175.mol2 20 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:45:54 Heat of formation + Delta-G solvation = 55.089003 kcal Electronic energy + Delta-G solvation = -7781.794237 eV Core-core repulsion = 6172.643583 eV Total energy + Delta-G solvation = -1609.150654 eV No. of doubly occupied orbitals = 27 Molecular weight (most abundant/longest-lived isotopes) = 152.064 amu Computer time = 0.08 seconds Orbital eigenvalues (eV) -39.11446 -33.30276 -31.48931 -28.53420 -26.63803 -24.57944 -19.87209 -18.22359 -16.98864 -15.67275 -14.32967 -13.31406 -12.68222 -12.43997 -11.84232 -11.65098 -11.34423 -11.07706 -10.73899 -10.38497 -9.69128 -9.18995 -8.84319 -7.81395 -7.03722 -6.33951 -3.92780 3.17568 3.23765 3.27459 3.55494 4.19398 4.32250 4.52023 5.62137 6.20091 6.29742 6.56661 6.73097 7.08868 7.36548 7.61836 7.92783 8.00647 8.56251 9.02042 9.20289 9.24357 9.48390 10.67886 Molecular weight = 152.06amu Principal moments of inertia in cm(-1) A = 0.081183 B = 0.021204 C = 0.016967 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 344.819089 B = 1320.203973 C = 1649.879168 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.050 4.050 2 C 0.008 3.992 3 N -0.343 5.343 4 N -0.501 5.501 5 H 0.415 0.585 6 C -0.052 4.052 7 C -0.047 4.047 8 C -0.424 4.424 9 H 0.069 0.931 10 C 0.054 3.946 11 N -0.850 5.850 12 Si 0.914 3.086 13 H -0.272 1.272 14 H -0.284 1.284 15 H -0.272 1.272 16 H 0.056 0.944 17 H 0.067 0.933 18 H 0.050 0.950 19 H 0.193 0.807 20 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.515 0.292 0.003 1.543 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.158 4.158 3 N -0.170 5.170 4 N -0.212 5.212 5 H 0.255 0.745 6 C -0.196 4.196 7 C -0.057 4.057 8 C -0.459 4.459 9 H 0.087 0.913 10 C -0.154 4.154 11 N -0.484 5.484 12 Si 0.741 3.259 13 H -0.197 1.197 14 H -0.210 1.210 15 H -0.197 1.197 16 H 0.074 0.926 17 H 0.086 0.914 18 H 0.069 0.931 19 H 0.210 0.790 20 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -1.336 1.320 0.006 1.878 hybrid contribution 0.360 -1.523 -0.015 1.565 sum -0.976 -0.203 -0.009 0.997 Atomic orbital electron populations 1.19826 0.88995 1.01169 1.00900 1.22267 0.95454 0.91917 1.06184 1.76241 0.88150 1.24395 1.28192 1.45588 1.05046 1.06535 1.63992 0.74546 1.24009 1.01399 0.81802 1.12412 1.18025 0.89794 0.92922 1.04948 1.18721 0.93456 0.89104 1.44634 0.91309 1.25536 0.94547 1.00615 0.94700 1.69422 1.01151 1.33395 1.44387 0.86267 0.78334 0.82119 0.79171 1.19695 1.20951 1.19690 0.92557 0.91427 0.93114 0.79047 0.91945 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.05 -1.03 10.24 36.01 0.37 -0.66 14 2 C 0.01 0.20 7.28 -81.84 -0.60 -0.40 14 3 N -0.34 -8.68 12.60 34.00 0.43 -8.25 14 4 N -0.50 -11.96 7.29 31.14 0.23 -11.74 14 5 H 0.42 8.08 8.96 -182.76 -1.64 6.44 14 6 C -0.05 -1.40 10.99 -15.99 -0.18 -1.57 14 7 C -0.05 -1.33 5.94 -106.84 -0.63 -1.96 14 8 C -0.42 -11.84 9.15 -37.76 -0.35 -12.19 14 9 H 0.07 1.82 7.37 -52.48 -0.39 1.43 14 10 C 0.05 1.43 5.49 -17.35 -0.10 1.34 14 11 N -0.85 -23.00 10.33 55.54 0.57 -22.43 14 12 Si 0.91 20.15 29.56 -169.99 -5.02 15.13 14 13 H -0.27 -5.91 7.11 56.52 0.40 -5.51 14 14 H -0.28 -6.14 7.11 56.52 0.40 -5.74 14 15 H -0.27 -5.91 7.11 56.52 0.40 -5.51 14 16 H 0.06 1.06 8.14 -51.93 -0.42 0.64 14 17 H 0.07 1.33 7.61 -51.93 -0.40 0.94 14 18 H 0.05 0.93 8.14 -51.93 -0.42 0.51 14 19 H 0.19 5.18 5.75 -52.49 -0.30 4.88 14 20 H 0.27 6.78 8.30 -40.82 -0.34 6.44 14 LS Contribution 184.47 15.07 2.78 2.78 Total: -1.00 -30.23 184.47 -5.20 -35.42 By element: Atomic # 1 Polarization: 7.23 SS G_CDS: -2.70 Total: 4.53 kcal Atomic # 6 Polarization: -13.96 SS G_CDS: -1.48 Total: -15.44 kcal Atomic # 7 Polarization: -43.65 SS G_CDS: 1.23 Total: -42.42 kcal Atomic # 14 Polarization: 20.15 SS G_CDS: -5.02 Total: 15.13 kcal Total LS contribution 2.78 Total: 2.78 kcal Total: -30.23 -5.20 -35.42 kcal The number of atoms in the molecule is 20 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000044368175.mol2 20 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.511 kcal (2) G-P(sol) polarization free energy of solvation -30.227 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.284 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.195 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.422 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.089 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.08 seconds