Wall clock time and date at job start Mon Mar 30 2020 01:45:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.31014 * 125.18041 * 2 1 4 4 C 1.33015 * 109.97973 * 179.73947 * 3 2 1 5 5 C 1.39615 * 107.46622 * 359.97438 * 4 3 2 6 6 C 1.40060 * 127.06543 * 179.97438 * 5 4 3 7 7 H 1.08002 * 120.00721 * 180.02562 * 6 5 4 8 8 C 1.40078 * 119.99699 * 0.02957 * 6 5 4 9 9 N 1.30856 * 119.99629 * 359.97438 * 8 6 5 10 10 Si 1.86793 * 119.99913 * 180.02562 * 8 6 5 11 11 H 1.48498 * 109.47564 * 359.97438 * 10 8 6 12 12 H 1.48505 * 109.47307 * 120.00201 * 10 8 6 13 13 H 1.48508 * 109.46767 * 239.99692 * 10 8 6 14 14 N 1.35076 * 125.17470 * 179.70060 * 2 1 3 15 15 H 0.97004 * 126.48041 * 0.21920 * 14 2 1 16 16 H 1.08997 * 109.47338 * 90.01968 * 1 2 3 17 17 H 1.08998 * 109.47466 * 210.02535 * 1 2 3 18 18 H 1.09007 * 109.46877 * 330.02221 * 1 2 3 19 19 H 1.07998 * 126.26561 * 180.02562 * 4 3 2 20 20 H 0.97007 * 119.99566 * 180.02562 * 9 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2618 1.0708 0.0000 4 6 3.5454 0.7221 0.0057 5 6 3.6006 -0.6730 0.0101 6 6 4.7507 -1.4723 0.0162 7 1 4.6605 -2.5486 0.0188 8 6 6.0181 -0.8758 0.0190 9 7 6.1275 0.4282 0.0154 10 14 7.5520 -1.9418 0.0264 11 1 7.1596 -3.3740 0.0289 12 1 8.3620 -1.6521 -1.1841 13 1 8.3541 -1.6466 1.2409 14 7 2.2851 -1.1041 0.0058 15 1 1.9798 -2.0248 0.0076 16 1 -0.3634 -0.0004 -1.0276 17 1 -0.3634 -0.8897 0.5142 18 1 -0.3633 0.8903 0.5135 19 1 4.3902 1.3949 0.0075 20 1 7.0052 0.8412 0.0170 RHF calculation, no. of doubly occupied orbitals= 27 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000044369604.mol2 20 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:45:57 Heat of formation + Delta-G solvation = 11.973072 kcal Electronic energy + Delta-G solvation = -7733.648449 eV Core-core repulsion = 6122.628147 eV Total energy + Delta-G solvation = -1611.020301 eV No. of doubly occupied orbitals = 27 Molecular weight (most abundant/longest-lived isotopes) = 152.064 amu Computer time = 0.09 seconds Orbital eigenvalues (eV) -41.76592 -35.63197 -32.86709 -31.95590 -29.08058 -25.46471 -21.96802 -21.07209 -19.20887 -17.61838 -16.21442 -15.51604 -14.77630 -14.23011 -14.04003 -13.34139 -13.01099 -12.84299 -12.69350 -12.65923 -11.90119 -11.25436 -10.37293 -10.27574 -8.92164 -8.53403 -6.28457 1.29343 1.41818 1.58712 1.85916 2.21780 2.72485 2.97674 3.35992 4.22630 4.64124 4.91291 5.06356 5.17322 5.23712 5.67174 5.72605 5.97212 6.52561 6.84084 6.95537 7.41601 7.96569 8.44958 Molecular weight = 152.06amu Principal moments of inertia in cm(-1) A = 0.142572 B = 0.016785 C = 0.015140 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 196.345237 B = 1667.741711 C = 1848.942136 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.038 4.038 2 C 0.086 3.914 3 N -0.522 5.522 4 C -0.182 4.182 5 C 0.149 3.851 6 C -0.478 4.478 7 H 0.083 0.917 8 C 0.023 3.977 9 N -0.837 5.837 10 Si 1.009 2.991 11 H -0.255 1.255 12 H -0.267 1.267 13 H -0.267 1.267 14 N -0.602 5.602 15 H 0.414 0.586 16 H 0.074 0.926 17 H 0.085 0.915 18 H 0.076 0.924 19 H 0.163 0.837 20 H 0.286 0.714 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.134 -5.637 0.046 6.028 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.096 4.096 2 C -0.172 4.172 3 N -0.244 5.244 4 C -0.328 4.328 5 C 0.035 3.965 6 C -0.513 4.513 7 H 0.101 0.899 8 C -0.190 4.190 9 N -0.465 5.465 10 Si 0.829 3.171 11 H -0.178 1.178 12 H -0.192 1.192 13 H -0.192 1.192 14 N -0.215 5.215 15 H 0.251 0.749 16 H 0.093 0.907 17 H 0.103 0.897 18 H 0.095 0.905 19 H 0.179 0.821 20 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -2.299 -4.535 0.043 5.084 hybrid contribution 0.918 -1.257 -0.004 1.557 sum -1.381 -5.792 0.039 5.955 Atomic orbital electron populations 1.19942 0.83274 1.03543 1.02881 1.23391 0.96223 0.82109 1.15453 1.69381 1.04475 1.30873 1.19670 1.23231 0.92503 0.93827 1.23268 1.19359 0.83492 0.94432 0.99198 1.18822 0.89482 0.94196 1.48775 0.89885 1.26817 1.03715 0.96609 0.91863 1.69753 1.26919 1.12166 1.37649 0.84752 0.75255 0.78361 0.78710 1.17795 1.19164 1.19165 1.42905 1.06097 1.08680 1.63813 0.74881 0.90703 0.89656 0.90505 0.82057 0.90326 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.04 -1.24 10.51 71.24 0.75 -0.49 14 2 C 0.09 4.11 8.10 137.97 1.12 5.23 14 3 N -0.52 -29.90 11.18 -184.81 -2.07 -31.96 14 4 C -0.18 -11.21 10.88 84.85 0.92 -10.28 14 5 C 0.15 8.53 6.96 38.87 0.27 8.80 14 6 C -0.48 -26.16 9.45 23.16 0.22 -25.94 14 7 H 0.08 4.17 7.85 -2.91 -0.02 4.15 14 8 C 0.02 1.19 5.50 85.28 0.47 1.66 14 9 N -0.84 -46.13 10.35 21.86 0.23 -45.90 14 10 Si 1.01 38.70 29.56 68.60 2.03 40.72 14 11 H -0.25 -9.25 7.11 99.48 0.71 -8.54 14 12 H -0.27 -9.85 7.11 99.48 0.71 -9.14 14 13 H -0.27 -9.84 7.11 99.48 0.71 -9.14 14 14 N -0.60 -28.91 6.23 -178.78 -1.11 -30.02 14 15 H 0.41 16.14 8.96 -92.70 -0.83 15.31 14 16 H 0.07 2.18 8.14 -2.39 -0.02 2.16 14 17 H 0.08 2.23 8.14 -2.39 -0.02 2.21 14 18 H 0.08 2.42 8.14 -2.38 -0.02 2.40 14 19 H 0.16 10.46 5.78 -2.91 -0.02 10.44 14 20 H 0.29 14.14 8.30 -92.70 -0.77 13.37 14 Total: -1.00 -68.21 185.35 3.25 -64.96 By element: Atomic # 1 Polarization: 22.81 SS G_CDS: 0.42 Total: 23.23 kcal Atomic # 6 Polarization: -24.78 SS G_CDS: 3.75 Total: -21.03 kcal Atomic # 7 Polarization: -104.93 SS G_CDS: -2.95 Total: -107.88 kcal Atomic # 14 Polarization: 38.70 SS G_CDS: 2.03 Total: 40.72 kcal Total: -68.21 3.25 -64.96 kcal The number of atoms in the molecule is 20 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000044369604.mol2 20 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.935 kcal (2) G-P(sol) polarization free energy of solvation -68.209 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.726 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.247 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.962 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.973 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.09 seconds