Wall clock time and date at job start Mon Mar 30 2020 02:08:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31507 * 1 3 3 Si 1.86803 * 120.00412 * 2 1 4 4 H 1.48501 * 109.47195 * 270.00066 * 3 2 1 5 5 H 1.48507 * 109.46886 * 29.99808 * 3 2 1 6 6 H 1.48494 * 109.47512 * 149.99713 * 3 2 1 7 7 C 1.37882 * 120.00140 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99476 * 359.97438 * 7 2 1 9 9 C 1.50698 * 120.00134 * 180.02562 * 7 2 1 10 10 C 1.50699 * 109.46834 * 179.97438 * 9 7 2 11 11 O 1.20754 * 120.00328 * 0.02562 * 10 9 7 12 12 C 1.50706 * 120.00078 * 179.97438 * 10 9 7 13 13 C 1.52995 * 117.50181 * 223.74883 * 12 10 9 14 14 C 1.52993 * 117.50081 * 155.08648 * 12 10 9 15 15 H 0.97004 * 119.99563 * 0.02562 * 1 2 3 16 16 H 1.09000 * 109.47467 * 59.99944 * 9 7 2 17 17 H 1.08998 * 109.47274 * 299.99749 * 9 7 2 18 18 H 1.08998 * 115.54512 * 9.41645 * 12 10 9 19 19 H 1.09000 * 117.49859 * 0.02562 * 13 12 10 20 20 H 1.08999 * 117.49900 * 145.01759 * 13 12 10 21 21 H 1.08998 * 117.50372 * 214.98309 * 14 12 10 22 22 H 1.09006 * 117.50059 * 359.97438 * 14 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4402 0.7001 7 6 2.0045 -1.1941 -0.0005 8 1 1.4644 -2.1294 -0.0005 9 6 3.5115 -1.1941 0.0000 10 6 4.0137 -2.6149 -0.0001 11 8 3.2291 -3.5327 -0.0011 12 6 5.4954 -2.8904 -0.0001 13 6 6.0108 -3.9832 -0.9386 14 6 5.9650 -4.2296 0.5714 15 1 -0.4850 0.8401 -0.0004 16 1 3.8745 -0.6808 0.8905 17 1 3.8752 -0.6797 -0.8894 18 1 6.1349 -2.0225 0.1608 19 1 5.2783 -4.5028 -1.5564 20 1 6.9895 -3.8345 -1.3948 21 1 6.9136 -4.2430 1.1081 22 1 5.2024 -4.9114 0.9479 RHF calculation, no. of doubly occupied orbitals= 28 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000051690961.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:08:57 Heat of formation + Delta-G solvation = -20.565545 kcal Electronic energy + Delta-G solvation = -7940.141411 eV Core-core repulsion = 6268.105900 eV Total energy + Delta-G solvation = -1672.035511 eV No. of doubly occupied orbitals = 28 Molecular weight (most abundant/longest-lived isotopes) = 154.073 amu Computer time = 0.07 seconds Orbital eigenvalues (eV) -38.96384 -35.57245 -32.84068 -29.87182 -25.02594 -22.24107 -21.72713 -18.46514 -16.86420 -15.76541 -14.77483 -14.12768 -13.83401 -13.56967 -12.36733 -12.04356 -11.61150 -11.33152 -10.92827 -10.57418 -10.37359 -10.13136 -9.89470 -9.27214 -8.57672 -8.50939 -6.03405 -4.03322 2.76103 3.28030 3.35295 3.36238 4.20122 4.41844 4.65890 5.07399 5.19440 5.29795 5.48057 5.74008 5.87814 6.19140 6.29371 6.55208 6.73738 6.97792 7.63350 8.45583 8.64889 9.12470 9.55513 11.09789 Molecular weight = 154.07amu Principal moments of inertia in cm(-1) A = 0.095745 B = 0.015215 C = 0.013662 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 292.372406 B = 1839.790209 C = 2048.988045 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.068 3.932 3 Si 0.876 3.124 4 H -0.276 1.276 5 H -0.286 1.286 6 H -0.265 1.265 7 C -0.521 4.521 8 H 0.088 0.912 9 C -0.057 4.057 10 C 0.388 3.612 11 O -0.455 6.455 12 C -0.219 4.219 13 C -0.157 4.157 14 C -0.160 4.160 15 H 0.264 0.736 16 H 0.051 0.949 17 H 0.047 0.953 18 H 0.118 0.882 19 H 0.098 0.902 20 H 0.097 0.903 21 H 0.096 0.904 22 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.075 -2.370 -0.198 12.307 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.133 4.133 3 Si 0.703 3.297 4 H -0.201 1.201 5 H -0.212 1.212 6 H -0.190 1.190 7 C -0.559 4.559 8 H 0.106 0.894 9 C -0.094 4.094 10 C 0.263 3.737 11 O -0.329 6.329 12 C -0.238 4.238 13 C -0.194 4.194 14 C -0.197 4.197 15 H 0.074 0.926 16 H 0.069 0.931 17 H 0.065 0.935 18 H 0.136 0.864 19 H 0.117 0.883 20 H 0.115 0.885 21 H 0.114 0.886 22 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 11.484 -2.740 -0.195 11.808 hybrid contribution 0.499 1.146 -0.006 1.250 sum 11.983 -1.594 -0.201 12.091 Atomic orbital electron populations 1.69905 1.06246 1.26847 1.50730 1.25002 0.94790 0.98878 0.94642 0.86851 0.80354 0.83879 0.78595 1.20128 1.21157 1.19006 1.21067 0.88271 0.95573 1.50986 0.89355 1.20003 0.99378 0.91400 0.98661 1.24029 0.87058 0.92759 0.69811 1.90262 1.58548 1.48138 1.35913 1.23150 0.98562 0.94420 1.07668 1.22864 1.02278 1.01060 0.93159 1.22887 1.02658 0.97928 0.96202 0.92623 0.93093 0.93476 0.86358 0.88318 0.88451 0.88553 0.88070 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -28.26 13.96 55.43 0.77 -27.48 14 2 C 0.07 2.02 5.47 -17.82 -0.10 1.92 14 3 Si 0.88 21.26 27.47 -169.99 -4.67 16.59 14 4 H -0.28 -6.53 7.11 56.52 0.40 -6.13 14 5 H -0.29 -6.90 7.11 56.52 0.40 -6.49 14 6 H -0.27 -6.01 6.54 56.52 0.37 -5.64 14 7 C -0.52 -15.50 9.48 -34.44 -0.33 -15.82 14 8 H 0.09 2.95 7.00 -52.48 -0.37 2.58 14 9 C -0.06 -1.38 4.46 -29.04 -0.13 -1.51 14 10 C 0.39 8.53 6.91 -29.03 -0.20 8.33 14 11 O -0.46 -11.53 15.53 6.00 0.09 -11.44 14 12 C -0.22 -3.58 6.12 -91.77 -0.56 -4.14 14 13 C -0.16 -2.18 10.14 -26.70 -0.27 -2.45 14 14 C -0.16 -2.25 10.05 -26.70 -0.27 -2.52 14 15 H 0.26 7.69 8.31 -40.82 -0.34 7.35 14 16 H 0.05 1.17 7.20 -51.93 -0.37 0.79 14 17 H 0.05 1.07 7.57 -51.93 -0.39 0.67 14 18 H 0.12 1.66 8.14 -51.93 -0.42 1.24 14 19 H 0.10 1.48 8.14 -51.93 -0.42 1.06 14 20 H 0.10 1.08 8.14 -51.93 -0.42 0.66 14 21 H 0.10 1.08 8.14 -51.93 -0.42 0.66 14 22 H 0.10 1.56 7.89 -51.93 -0.41 1.15 14 LS Contribution 200.89 15.07 3.03 3.03 Total: -1.00 -32.57 200.89 -5.03 -37.60 By element: Atomic # 1 Polarization: 0.30 SS G_CDS: -2.40 Total: -2.10 kcal Atomic # 6 Polarization: -14.34 SS G_CDS: -1.86 Total: -16.20 kcal Atomic # 7 Polarization: -28.26 SS G_CDS: 0.77 Total: -27.48 kcal Atomic # 8 Polarization: -11.53 SS G_CDS: 0.09 Total: -11.44 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -4.67 Total: 16.59 kcal Total LS contribution 3.03 Total: 3.03 kcal Total: -32.57 -5.03 -37.60 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000051690961.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.037 kcal (2) G-P(sol) polarization free energy of solvation -32.571 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.534 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.031 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.602 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.566 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.07 seconds