Wall clock time and date at job start Mon Mar 30 2020 01:55:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.34939 * 126.63606 * 2 1 4 4 N 1.33466 * 109.02309 * 179.97438 * 3 2 1 5 5 N 1.28748 * 109.98830 * 359.97438 * 4 3 2 6 6 N 1.36675 * 126.63399 * 179.97438 * 2 1 3 7 7 C 1.37566 * 126.88201 * 0.02562 * 6 2 1 8 8 H 1.07993 * 120.00909 * 354.07064 * 7 6 2 9 9 C 1.39011 * 119.99609 * 174.07284 * 7 6 2 10 10 N 1.31255 * 120.00285 * 5.83017 * 9 7 6 11 11 Si 1.86802 * 120.00029 * 185.83664 * 9 7 6 12 12 H 1.48496 * 109.47167 * 94.97970 * 11 9 7 13 13 H 1.48504 * 109.46995 * 214.98049 * 11 9 7 14 14 H 1.48499 * 109.47005 * 334.97762 * 11 9 7 15 15 H 1.09002 * 109.47094 * 270.02356 * 1 2 3 16 16 H 1.08996 * 109.47281 * 30.02509 * 1 2 3 17 17 H 1.09005 * 109.47272 * 150.02580 * 1 2 3 18 18 H 1.07995 * 125.49321 * 359.97438 * 3 2 1 19 19 H 0.96996 * 120.00764 * 179.97438 * 10 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3122 1.0828 0.0000 4 7 3.5843 0.6790 0.0006 5 7 3.6377 -0.6074 0.0015 6 7 2.3225 -1.0968 0.0005 7 6 1.9322 -2.4159 0.0006 8 1 0.8870 -2.6699 0.0969 9 6 2.8833 -3.4221 -0.1232 10 7 4.1609 -3.1210 -0.1250 11 14 2.3432 -5.2028 -0.2872 12 1 2.2820 -5.5712 -1.7244 13 1 3.3177 -6.0816 0.4080 14 1 1.0006 -5.3712 0.3247 15 1 -0.3633 0.0004 1.0277 16 1 -0.3633 0.8897 -0.5142 17 1 -0.3634 -0.8902 -0.5134 18 1 1.9808 2.1107 -0.0004 19 1 4.8246 -3.8231 -0.2110 RHF calculation, no. of doubly occupied orbitals= 27 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000062429856.mol2 19 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:55:49 Heat of formation + Delta-G solvation = 57.389028 kcal Electronic energy + Delta-G solvation = -7949.749514 eV Core-core repulsion = 6275.272685 eV Total energy + Delta-G solvation = -1674.476829 eV No. of doubly occupied orbitals = 27 Molecular weight (most abundant/longest-lived isotopes) = 153.060 amu Computer time = 0.09 seconds Orbital eigenvalues (eV) -42.00948 -36.03192 -33.82356 -32.09055 -27.91216 -27.40247 -23.05242 -21.43020 -19.45033 -17.37145 -16.22582 -16.01968 -14.90447 -14.45239 -13.98994 -13.52530 -13.23402 -13.05926 -12.78793 -12.05735 -11.81493 -11.55778 -11.19435 -10.59981 -9.29354 -8.69773 -6.62616 1.09002 1.37541 1.58469 1.63692 2.06791 2.23665 2.77634 2.91305 4.39417 4.42700 4.60308 4.87163 4.91792 5.00389 5.20268 5.41887 5.97916 5.98913 6.61221 7.21631 8.20060 8.32303 Molecular weight = 153.06amu Principal moments of inertia in cm(-1) A = 0.084154 B = 0.022005 C = 0.017624 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 332.642352 B = 1272.149034 C = 1588.363037 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.049 4.049 2 C -0.105 4.105 3 C -0.105 4.105 4 N -0.371 5.371 5 N -0.162 5.162 6 N -0.166 5.166 7 C -0.342 4.342 8 H 0.148 0.852 9 C -0.004 4.004 10 N -0.813 5.813 11 Si 1.029 2.971 12 H -0.262 1.262 13 H -0.271 1.271 14 H -0.238 1.238 15 H 0.074 0.926 16 H 0.096 0.904 17 H 0.065 0.935 18 H 0.188 0.812 19 H 0.287 0.713 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.797 -2.835 -0.304 9.247 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.240 4.240 3 C -0.272 4.272 4 N -0.228 5.228 5 N -0.138 5.138 6 N 0.061 4.939 7 C -0.478 4.478 8 H 0.165 0.835 9 C -0.218 4.218 10 N -0.440 5.440 11 Si 0.846 3.154 12 H -0.187 1.187 13 H -0.196 1.196 14 H -0.160 1.160 15 H 0.093 0.907 16 H 0.115 0.885 17 H 0.083 0.917 18 H 0.205 0.795 19 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -6.939 -3.181 -0.304 7.640 hybrid contribution -0.681 -0.262 -0.033 0.730 sum -7.620 -3.443 -0.336 8.368 Atomic orbital electron populations 1.20071 0.84300 1.03660 1.02790 1.22354 0.97225 0.86857 1.17552 1.22874 0.88539 1.00222 1.15552 1.73984 1.21979 1.06955 1.19905 1.82449 0.97544 1.01043 1.32733 1.47102 1.05690 1.06742 1.34411 1.20974 0.97147 0.77921 1.51737 0.83507 1.27176 0.94229 1.07207 0.93236 1.70322 1.02342 1.37203 1.34145 0.84444 0.79750 0.71786 0.79429 1.18675 1.19560 1.16030 0.90716 0.88488 0.91652 0.79517 0.90273 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.05 -1.65 10.10 71.24 0.72 -0.93 13 2 C -0.11 -5.06 6.98 41.05 0.29 -4.78 13 3 C -0.10 -5.16 11.78 83.69 0.99 -4.17 13 4 N -0.37 -21.89 12.33 -58.68 -0.72 -22.62 13 5 N -0.16 -10.31 11.75 37.02 0.44 -9.88 13 6 N -0.17 -9.48 3.78 -178.50 -0.67 -10.15 13 7 C -0.34 -17.90 10.01 83.98 0.84 -17.06 13 8 H 0.15 6.58 7.31 -2.91 -0.02 6.55 13 9 C 0.00 -0.20 5.50 84.96 0.47 0.26 13 10 N -0.81 -46.15 11.91 21.66 0.26 -45.89 13 11 Si 1.03 36.60 29.56 68.60 2.03 38.63 13 12 H -0.26 -9.01 7.11 99.48 0.71 -8.31 13 13 H -0.27 -9.44 7.11 99.48 0.71 -8.74 13 14 H -0.24 -7.51 7.11 99.48 0.71 -6.80 13 15 H 0.07 2.22 8.14 -2.39 -0.02 2.21 13 16 H 0.10 2.59 8.14 -2.39 -0.02 2.57 13 17 H 0.06 2.09 7.59 -2.38 -0.02 2.07 13 18 H 0.19 7.32 8.06 -2.91 -0.02 7.29 13 19 H 0.29 14.70 8.31 -92.71 -0.77 13.93 13 Total: -1.00 -71.68 182.56 5.87 -65.81 By element: Atomic # 1 Polarization: 9.53 SS G_CDS: 1.25 Total: 10.78 kcal Atomic # 6 Polarization: -29.98 SS G_CDS: 3.30 Total: -26.68 kcal Atomic # 7 Polarization: -87.83 SS G_CDS: -0.70 Total: -88.54 kcal Atomic # 14 Polarization: 36.60 SS G_CDS: 2.03 Total: 38.63 kcal Total: -71.68 5.87 -65.81 kcal The number of atoms in the molecule is 19 The average number of expansion shells was 13.00 The maximum number of expansion shells was 13 The minimum number of expansion shells was 13 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000062429856.mol2 19 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.199 kcal (2) G-P(sol) polarization free energy of solvation -71.682 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.517 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.872 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.810 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.389 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.09 seconds