Wall clock time and date at job start Mon Mar 30 2020 02:08:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 N 1.28998 * 126.60737 * 2 1 4 4 N 1.28576 * 109.45731 * 180.02562 * 3 2 1 5 5 N 1.28804 * 110.11026 * 0.02562 * 4 3 2 6 6 C 1.33289 * 107.71877 * 0.02562 * 5 4 3 7 7 C 1.40545 * 127.04131 * 180.02562 * 6 5 4 8 8 H 1.08005 * 120.00473 * 179.97438 * 7 6 5 9 9 C 1.40260 * 120.00162 * 359.97370 * 7 6 5 10 10 N 1.30641 * 119.99901 * 359.97438 * 9 7 6 11 11 Si 1.86796 * 119.99984 * 179.97438 * 9 7 6 12 12 H 1.48505 * 109.47149 * 60.00391 * 11 9 7 13 13 H 1.48509 * 109.46816 * 179.97438 * 11 9 7 14 14 H 1.48498 * 109.47429 * 299.99911 * 11 9 7 15 15 H 1.08996 * 109.46873 * 270.00023 * 1 2 3 16 16 H 1.09004 * 109.46505 * 29.99367 * 1 2 3 17 17 H 1.08997 * 109.47385 * 149.99818 * 1 2 3 18 18 H 0.96996 * 120.00563 * 180.02562 * 10 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2342 1.0355 0.0000 4 7 3.4628 0.6564 -0.0005 5 7 3.5293 -0.6299 -0.0014 6 6 2.2823 -1.1006 -0.0021 7 6 1.8864 -2.4492 -0.0026 8 1 0.8368 -2.7039 -0.0027 9 6 2.8543 -3.4643 -0.0031 10 7 4.1239 -3.1563 -0.0036 11 14 2.3280 -5.2566 -0.0031 12 1 1.5165 -5.5342 -1.2154 13 1 3.5320 -6.1260 -0.0043 14 1 1.5174 -5.5345 1.2096 15 1 -0.3633 0.0000 1.0276 16 1 -0.3632 0.8901 -0.5138 17 1 -0.3634 -0.8899 -0.5138 18 1 4.7933 -3.8582 -0.0043 RHF calculation, no. of doubly occupied orbitals= 27 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000063046494.mol2 18 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:08:10 Heat of formation + Delta-G solvation = 73.461074 kcal Electronic energy + Delta-G solvation = -8065.500684 eV Core-core repulsion = 6326.294880 eV Total energy + Delta-G solvation = -1739.205803 eV No. of doubly occupied orbitals = 27 Molecular weight (most abundant/longest-lived isotopes) = 154.055 amu Computer time = 0.08 seconds Orbital eigenvalues (eV) -43.61281 -35.89236 -35.52006 -32.41748 -29.10717 -27.76908 -23.60808 -22.63735 -19.46753 -17.74278 -17.15739 -16.65515 -15.29622 -14.38468 -14.07577 -13.67564 -13.00008 -12.95933 -12.65327 -12.14674 -11.96943 -11.50908 -10.95117 -10.92589 -10.30218 -8.64288 -6.86895 1.04532 1.45590 1.58552 1.62471 2.07911 2.18066 2.29239 3.17041 4.06574 4.48705 4.64038 4.69810 4.92496 5.16317 5.74832 5.80578 6.12035 6.61579 6.67546 8.33191 8.70404 Molecular weight = 154.05amu Principal moments of inertia in cm(-1) A = 0.087873 B = 0.021551 C = 0.017470 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 318.563715 B = 1298.927739 C = 1602.347669 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.102 3.898 2 N -0.401 5.401 3 N -0.193 5.193 4 N -0.140 5.140 5 N -0.398 5.398 6 C 0.292 3.708 7 C -0.455 4.455 8 H 0.122 0.878 9 C 0.028 3.972 10 N -0.781 5.781 11 Si 1.015 2.985 12 H -0.250 1.250 13 H -0.273 1.273 14 H -0.250 1.250 15 H 0.086 0.914 16 H 0.100 0.900 17 H 0.104 0.896 18 H 0.291 0.709 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.718 -5.205 -0.084 10.153 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.039 4.039 2 N -0.207 5.207 3 N -0.180 5.180 4 N -0.135 5.135 5 N -0.259 5.259 6 C 0.043 3.957 7 C -0.498 4.498 8 H 0.139 0.861 9 C -0.195 4.195 10 N -0.406 5.406 11 Si 0.833 3.167 12 H -0.173 1.173 13 H -0.197 1.197 14 H -0.174 1.174 15 H 0.104 0.896 16 H 0.118 0.882 17 H 0.123 0.877 18 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -7.541 -4.119 -0.082 8.592 hybrid contribution -0.613 -0.938 0.018 1.121 sum -8.154 -5.057 -0.064 9.595 Atomic orbital electron populations 1.22064 0.71645 1.05675 1.04537 1.48523 1.09843 1.03352 1.59021 1.77919 0.98140 1.14731 1.27256 1.77799 1.11524 1.08549 1.15632 1.76046 1.18746 0.99335 1.31727 1.23130 0.84834 0.92030 0.95688 1.19058 0.96911 0.85453 1.48334 0.86052 1.27188 0.93794 1.07163 0.91357 1.70036 1.02838 1.38032 1.29653 0.84770 0.78805 0.72441 0.80701 1.17333 1.19710 1.17374 0.89594 0.88159 0.87716 0.89780 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 3.30 11.25 127.77 1.44 4.74 13 2 N -0.40 -19.73 3.82 -366.25 -1.40 -21.13 13 3 N -0.19 -10.50 13.25 37.02 0.49 -10.01 13 4 N -0.14 -8.49 13.38 37.02 0.50 -7.99 13 5 N -0.40 -25.06 10.71 -55.19 -0.59 -25.65 13 6 C 0.29 16.41 7.63 133.78 1.02 17.43 13 7 C -0.46 -22.85 9.06 23.32 0.21 -22.63 13 8 H 0.12 5.11 7.29 -2.91 -0.02 5.09 13 9 C 0.03 1.34 5.50 85.36 0.47 1.81 13 10 N -0.78 -42.33 11.98 21.88 0.26 -42.07 13 11 Si 1.02 34.58 29.56 68.60 2.03 36.61 13 12 H -0.25 -7.92 7.11 99.48 0.71 -7.22 13 13 H -0.27 -9.09 7.11 99.48 0.71 -8.39 13 14 H -0.25 -7.95 7.11 99.48 0.71 -7.25 13 15 H 0.09 2.41 8.14 -2.39 -0.02 2.39 13 16 H 0.10 2.74 8.14 -2.39 -0.02 2.72 13 17 H 0.10 2.93 7.48 -2.39 -0.02 2.91 13 18 H 0.29 14.13 8.29 -92.71 -0.77 13.36 13 Total: -1.00 -70.97 176.83 5.70 -65.27 By element: Atomic # 1 Polarization: 2.35 SS G_CDS: 1.27 Total: 3.62 kcal Atomic # 6 Polarization: -1.79 SS G_CDS: 3.14 Total: 1.35 kcal Atomic # 7 Polarization: -106.10 SS G_CDS: -0.74 Total: -106.84 kcal Atomic # 14 Polarization: 34.58 SS G_CDS: 2.03 Total: 36.61 kcal Total: -70.97 5.70 -65.27 kcal The number of atoms in the molecule is 18 The average number of expansion shells was 13.00 The maximum number of expansion shells was 13 The minimum number of expansion shells was 13 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000063046494.mol2 18 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 138.727 kcal (2) G-P(sol) polarization free energy of solvation -70.965 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.762 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.699 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.266 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.461 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.08 seconds