Wall clock time and date at job start Mon Mar 30 2020 01:50:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.51845 * 126.34103 * 2 1 4 4 C 1.55135 * 104.31231 * 156.13591 * 3 2 1 5 5 C 1.54982 * 102.22853 * 37.93458 * 4 3 2 6 6 H 1.09009 * 110.69591 * 81.35879 * 5 4 3 7 7 C 1.50692 * 110.56978 * 204.16491 * 5 4 3 8 8 H 1.08001 * 120.00548 * 359.65186 * 7 5 4 9 9 C 1.37877 * 120.00027 * 179.64883 * 7 5 4 10 10 N 1.31516 * 119.99938 * 8.40383 * 9 7 5 11 11 Si 1.86796 * 120.00008 * 188.39581 * 9 7 5 12 12 H 1.48504 * 109.46993 * 94.98469 * 11 9 7 13 13 H 1.48506 * 109.47083 * 214.97957 * 11 9 7 14 14 H 1.48492 * 109.47559 * 334.98068 * 11 9 7 15 15 C 1.51453 * 126.33878 * 180.31732 * 2 1 3 16 16 H 1.08004 * 119.99934 * 179.68931 * 1 2 3 17 17 H 1.07995 * 119.99773 * 359.40987 * 1 2 3 18 18 H 1.08995 * 110.44172 * 274.96970 * 3 2 1 19 19 H 1.08999 * 110.43834 * 37.49721 * 3 2 1 20 20 H 1.09001 * 111.04072 * 279.68743 * 4 3 2 21 21 H 1.09004 * 110.89630 * 156.11872 * 4 3 2 22 22 H 0.96998 * 119.99799 * 179.97438 * 10 9 7 23 23 H 1.09002 * 109.97989 * 299.67728 * 15 2 1 24 24 H 1.08994 * 109.98433 * 60.98381 * 15 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.2098 1.2231 0.0000 4 6 3.5444 0.7174 0.6081 5 6 3.6618 -0.7053 0.0048 6 1 4.0608 -0.6622 -1.0088 7 6 4.5262 -1.5801 0.8757 8 1 4.9662 -1.1787 1.7766 9 6 4.7554 -2.8930 0.5224 10 7 4.3608 -3.3366 -0.6512 11 14 5.6264 -4.0415 1.7104 12 1 4.6186 -4.7991 2.4951 13 1 6.4758 -4.9913 0.9478 14 1 6.4770 -3.2474 2.6328 15 6 2.2075 -1.2200 -0.0068 16 1 -0.5400 -0.9353 -0.0051 17 1 -0.5399 0.9352 0.0096 18 1 2.3641 1.5822 -1.0175 19 1 1.7826 2.0099 0.6217 20 1 3.4871 0.6737 1.6958 21 1 4.3783 1.3433 0.2904 22 1 4.5224 -4.2601 -0.8998 23 1 2.0196 -1.8255 0.8799 24 1 2.0280 -1.8095 -0.9058 RHF calculation, no. of doubly occupied orbitals= 28 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000075520105.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:50:23 Heat of formation + Delta-G solvation = -5.618281 kcal Electronic energy + Delta-G solvation = -7984.966687 eV Core-core repulsion = 6476.723911 eV Total energy + Delta-G solvation = -1508.242776 eV No. of doubly occupied orbitals = 28 Molecular weight (most abundant/longest-lived isotopes) = 152.090 amu Computer time = 0.10 seconds Orbital eigenvalues (eV) -37.24282 -32.73828 -30.46076 -27.80889 -25.07828 -22.87628 -19.31414 -17.41061 -16.24745 -14.53461 -14.42755 -13.65704 -12.98786 -12.19090 -11.87318 -11.44866 -11.11020 -10.74987 -10.48330 -10.38435 -9.79022 -9.61573 -9.07267 -8.89667 -8.36855 -8.14346 -6.00090 -4.00948 3.01037 3.32190 3.39383 3.42554 4.46625 5.29383 5.45118 5.78543 6.08504 6.09512 6.33534 6.53313 6.73600 6.77230 6.98270 7.12753 7.19628 7.31372 7.62737 7.72526 7.94142 8.03152 8.49162 9.02303 9.62475 11.10389 Molecular weight = 152.09amu Principal moments of inertia in cm(-1) A = 0.088854 B = 0.017175 C = 0.015963 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 315.048810 B = 1629.932558 C = 1753.625949 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C -0.099 4.099 3 C -0.099 4.099 4 C -0.117 4.117 5 C 0.047 3.953 6 H 0.035 0.965 7 C -0.515 4.515 8 H 0.056 0.944 9 C 0.063 3.937 10 N -0.890 5.890 11 Si 0.888 3.112 12 H -0.281 1.281 13 H -0.287 1.287 14 H -0.274 1.274 15 C -0.081 4.081 16 H 0.092 0.908 17 H 0.087 0.913 18 H 0.068 0.932 19 H 0.053 0.947 20 H 0.057 0.943 21 H 0.050 0.950 22 H 0.260 0.740 23 H 0.063 0.937 24 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.377 4.427 1.347 5.729 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.274 4.274 2 C -0.099 4.099 3 C -0.136 4.136 4 C -0.155 4.155 5 C 0.028 3.972 6 H 0.053 0.947 7 C -0.553 4.553 8 H 0.075 0.925 9 C -0.139 4.139 10 N -0.528 5.528 11 Si 0.716 3.284 12 H -0.207 1.207 13 H -0.213 1.213 14 H -0.199 1.199 15 C -0.119 4.119 16 H 0.110 0.890 17 H 0.105 0.895 18 H 0.087 0.913 19 H 0.072 0.928 20 H 0.075 0.925 21 H 0.069 0.931 22 H 0.069 0.931 23 H 0.081 0.919 24 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -3.362 4.260 1.233 5.565 hybrid contribution 0.357 -0.785 0.582 1.040 sum -3.006 3.475 1.814 4.940 Atomic orbital electron populations 1.22896 0.94566 1.00567 1.09341 1.22903 0.94563 0.98438 0.93969 1.21572 0.96497 0.95252 1.00246 1.22639 0.94058 0.99203 0.99602 1.19476 0.91537 0.89546 0.96605 0.94689 1.21178 1.30237 0.95614 1.08294 0.92530 1.25000 0.95632 0.98391 0.94892 1.69987 1.47591 1.15986 1.19214 0.86650 0.79553 0.80928 0.81311 1.20733 1.21315 1.19872 1.21409 0.95750 0.93630 1.01070 0.88956 0.89496 0.91342 0.92831 0.92454 0.93145 0.93069 0.91893 0.91884 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.24 -4.27 14.51 29.01 0.42 -3.84 14 2 C -0.10 -2.03 6.10 -100.13 -0.61 -2.64 14 3 C -0.10 -1.87 6.65 -26.19 -0.17 -2.04 14 4 C -0.12 -2.51 6.36 -24.56 -0.16 -2.67 14 5 C 0.05 1.20 2.69 -90.06 -0.24 0.96 14 6 H 0.03 0.97 8.14 -51.92 -0.42 0.55 14 7 C -0.52 -14.43 8.35 -34.44 -0.29 -14.72 14 8 H 0.06 1.56 7.78 -52.49 -0.41 1.15 14 9 C 0.06 1.77 5.28 -17.82 -0.09 1.67 14 10 N -0.89 -26.07 12.97 55.43 0.72 -25.35 14 11 Si 0.89 21.52 29.55 -169.99 -5.02 16.50 14 12 H -0.28 -6.76 7.11 56.52 0.40 -6.36 14 13 H -0.29 -6.91 7.11 56.52 0.40 -6.51 14 14 H -0.27 -6.53 7.11 56.52 0.40 -6.13 14 15 C -0.08 -1.97 5.64 -26.84 -0.15 -2.12 14 16 H 0.09 1.60 8.06 -52.48 -0.42 1.18 14 17 H 0.09 1.36 8.06 -52.49 -0.42 0.94 14 18 H 0.07 1.22 8.14 -51.93 -0.42 0.80 14 19 H 0.05 0.89 8.14 -51.93 -0.42 0.47 14 20 H 0.06 1.22 8.04 -51.93 -0.42 0.81 14 21 H 0.05 1.00 8.14 -51.93 -0.42 0.58 14 22 H 0.26 7.23 8.31 -40.82 -0.34 6.89 14 23 H 0.06 1.61 7.82 -51.93 -0.41 1.20 14 24 H 0.06 1.62 8.14 -51.93 -0.42 1.19 14 LS Contribution 208.20 15.07 3.14 3.14 Total: -1.00 -28.56 208.20 -5.79 -34.35 By element: Atomic # 1 Polarization: 0.09 SS G_CDS: -3.33 Total: -3.23 kcal Atomic # 6 Polarization: -24.10 SS G_CDS: -1.30 Total: -25.40 kcal Atomic # 7 Polarization: -26.07 SS G_CDS: 0.72 Total: -25.35 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -5.02 Total: 16.50 kcal Total LS contribution 3.14 Total: 3.14 kcal Total: -28.56 -5.79 -34.35 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075520105.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.729 kcal (2) G-P(sol) polarization free energy of solvation -28.559 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.170 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.788 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.348 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.618 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.10 seconds