Wall clock time and date at job start Mon Mar 30 2020 01:59:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86798 * 119.99896 * 2 1 4 4 H 1.48500 * 109.47071 * 179.97438 * 3 2 1 5 5 H 1.48493 * 109.47092 * 299.99886 * 3 2 1 6 6 H 1.48502 * 109.46993 * 60.00124 * 3 2 1 7 7 C 1.37880 * 119.99805 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99696 * 180.02562 * 7 2 1 9 9 C 1.50696 * 120.00164 * 359.97438 * 7 2 1 10 10 H 1.09006 * 109.80374 * 300.51456 * 9 7 2 11 11 C 1.53088 * 109.63822 * 180.02562 * 9 7 2 12 12 C 1.50306 * 109.71867 * 191.34122 * 11 9 7 13 13 C 1.29818 * 122.89012 * 16.47859 * 12 11 9 14 14 C 1.50137 * 123.28889 * 359.64212 * 13 12 11 15 15 N 1.46844 * 110.27457 * 17.05894 * 14 13 12 16 16 H 0.97003 * 120.00008 * 359.97438 * 1 2 3 17 17 H 1.09004 * 109.42880 * 71.26231 * 11 9 7 18 18 H 1.08997 * 109.42932 * 311.42144 * 11 9 7 19 19 H 1.08006 * 118.55166 * 196.49594 * 12 11 9 20 20 H 1.08007 * 118.35499 * 179.62449 * 13 12 11 21 21 H 1.09000 * 109.33819 * 137.29763 * 14 13 12 22 22 H 1.08996 * 109.34472 * 256.97203 * 14 13 12 23 23 H 1.00897 * 111.00314 * 185.68673 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8904 2.3964 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 1 0.6157 -2.5588 0.8832 11 6 2.2424 -3.6656 -0.0005 12 6 1.5138 -4.9505 -0.2788 13 6 0.3176 -4.9879 -0.7818 14 6 -0.4680 -3.7572 -1.1317 15 7 0.4216 -2.5918 -1.2138 16 1 -0.4850 0.8401 0.0004 17 1 2.7289 -3.7281 0.9729 18 1 2.9954 -3.5015 -0.7713 19 1 2.0070 -5.8837 -0.0499 20 1 -0.1350 -5.9526 -0.9577 21 1 -0.9597 -3.9042 -2.0933 22 1 -1.2216 -3.5797 -0.3645 23 1 -0.1057 -1.7436 -1.3568 RHF calculation, no. of doubly occupied orbitals= 28 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000075520442.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:59:26 Heat of formation + Delta-G solvation = -10.682372 kcal Electronic energy + Delta-G solvation = -8195.842650 eV Core-core repulsion = 6621.954368 eV Total energy + Delta-G solvation = -1573.888283 eV No. of doubly occupied orbitals = 28 Molecular weight (most abundant/longest-lived isotopes) = 153.085 amu Computer time = 0.07 seconds Orbital eigenvalues (eV) -39.16847 -34.92391 -32.46947 -31.64089 -27.10639 -24.67820 -22.84719 -18.75597 -18.32791 -17.22555 -16.30349 -15.30584 -15.01232 -14.49784 -14.07872 -13.77553 -13.13556 -12.81173 -12.58305 -12.21883 -12.03853 -11.31619 -10.87534 -10.72972 -9.79439 -8.87530 -8.20116 -6.33132 1.41530 1.43361 1.49075 1.55935 2.41527 3.05997 4.06720 4.11964 4.33142 4.64592 4.70033 4.78453 4.83099 5.06774 5.20201 5.48149 5.75153 5.75266 6.09913 6.19292 6.61644 6.88972 7.09412 7.39025 8.88625 Molecular weight = 153.08amu Principal moments of inertia in cm(-1) A = 0.103509 B = 0.018317 C = 0.016203 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 270.442072 B = 1528.227277 C = 1727.644219 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.928 5.928 2 C 0.015 3.985 3 Si 0.969 3.031 4 H -0.266 1.266 5 H -0.278 1.278 6 H -0.280 1.280 7 C -0.533 4.533 8 H 0.060 0.940 9 C 0.206 3.794 10 H -0.041 1.041 11 C -0.079 4.079 12 C -0.155 4.155 13 C -0.169 4.169 14 C 0.074 3.926 15 N -0.690 5.690 16 H 0.266 0.734 17 H 0.063 0.937 18 H 0.063 0.937 19 H 0.128 0.872 20 H 0.134 0.866 21 H 0.082 0.918 22 H 0.012 0.988 23 H 0.347 0.653 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.206 -5.131 -0.891 5.346 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.184 4.184 3 Si 0.794 3.206 4 H -0.191 1.191 5 H -0.204 1.204 6 H -0.206 1.206 7 C -0.571 4.571 8 H 0.078 0.922 9 C 0.098 3.902 10 H -0.024 1.024 11 C -0.116 4.116 12 C -0.173 4.173 13 C -0.187 4.187 14 C -0.056 4.056 15 N -0.324 5.324 16 H 0.075 0.925 17 H 0.082 0.918 18 H 0.081 0.919 19 H 0.145 0.855 20 H 0.151 0.849 21 H 0.101 0.899 22 H 0.030 0.970 23 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges 1.544 -5.350 -1.265 5.711 hybrid contribution -0.558 1.237 0.744 1.548 sum 0.986 -4.113 -0.521 4.262 Atomic orbital electron populations 1.69850 1.07377 1.27904 1.51717 1.25877 0.95836 1.02934 0.93744 0.85338 0.78922 0.78713 0.77598 1.19060 1.20393 1.20569 1.21608 0.93455 0.91524 1.50518 0.92166 1.19073 0.90993 0.93481 0.86637 1.02385 1.20552 0.98051 0.92781 1.00243 1.22505 0.96653 0.98529 0.99635 1.22426 0.96825 0.98393 1.01098 1.20864 0.94078 0.91299 0.99323 1.61289 1.25475 1.06142 1.39530 0.92458 0.91829 0.91858 0.85466 0.84853 0.89941 0.96974 0.83259 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -53.74 11.59 21.45 0.25 -53.50 14 2 C 0.01 0.83 5.27 84.66 0.45 1.27 14 3 Si 0.97 43.93 29.54 68.60 2.03 45.96 14 4 H -0.27 -11.71 7.11 99.48 0.71 -11.00 14 5 H -0.28 -12.33 7.11 99.48 0.71 -11.62 14 6 H -0.28 -12.38 7.11 99.48 0.71 -11.68 14 7 C -0.53 -30.34 8.74 25.60 0.22 -30.11 14 8 H 0.06 3.35 7.75 -2.91 -0.02 3.32 14 9 C 0.21 11.09 2.43 44.13 0.11 11.20 14 10 H -0.04 -2.48 8.08 -2.38 -0.02 -2.50 14 11 C -0.08 -3.50 5.59 29.75 0.17 -3.33 14 12 C -0.16 -5.78 9.94 26.74 0.27 -5.52 14 13 C -0.17 -6.20 9.92 26.69 0.26 -5.93 14 14 C 0.07 3.14 6.74 85.39 0.58 3.71 14 15 N -0.69 -35.45 6.61 -499.60 -3.30 -38.76 14 16 H 0.27 14.52 8.31 -92.71 -0.77 13.74 14 17 H 0.06 2.65 8.14 -2.39 -0.02 2.63 14 18 H 0.06 2.84 8.09 -2.39 -0.02 2.82 14 19 H 0.13 3.75 8.06 -2.91 -0.02 3.73 14 20 H 0.13 3.79 8.06 -2.91 -0.02 3.77 14 21 H 0.08 3.09 8.14 -2.39 -0.02 3.07 14 22 H 0.01 0.55 8.14 -2.39 -0.02 0.53 14 23 H 0.35 19.27 6.67 -89.70 -0.60 18.67 14 Total: -1.00 -61.13 197.14 1.61 -59.53 By element: Atomic # 1 Polarization: 14.90 SS G_CDS: 0.59 Total: 15.48 kcal Atomic # 6 Polarization: -30.76 SS G_CDS: 2.05 Total: -28.71 kcal Atomic # 7 Polarization: -89.20 SS G_CDS: -3.06 Total: -92.25 kcal Atomic # 14 Polarization: 43.93 SS G_CDS: 2.03 Total: 45.96 kcal Total: -61.13 1.61 -59.53 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075520442.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.845 kcal (2) G-P(sol) polarization free energy of solvation -61.133 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.288 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.606 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.527 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.682 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.07 seconds