Wall clock time and date at job start Mon Mar 30 2020 02:05:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86800 * 119.99536 * 2 1 4 4 H 1.48498 * 109.46749 * 239.99862 * 3 2 1 5 5 H 1.48497 * 109.47273 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.46997 * 119.99826 * 3 2 1 7 7 C 1.37875 * 120.00095 * 179.97438 * 2 1 3 8 8 H 1.07994 * 119.99788 * 180.02562 * 7 2 1 9 9 C 1.50698 * 119.99948 * 359.97438 * 7 2 1 10 10 H 1.08996 * 110.12526 * 301.67496 * 9 7 2 11 11 C 1.51092 * 110.14286 * 180.02562 * 9 7 2 12 12 C 1.33056 * 106.93768 * 240.79838 * 11 9 7 13 13 C 1.46541 * 109.52173 * 0.26644 * 12 11 9 14 14 O 1.21528 * 125.02258 * 179.73526 * 13 12 11 15 15 O 1.34623 * 109.94482 * 359.53329 * 13 12 11 16 16 H 0.96998 * 120.00116 * 0.02562 * 1 2 3 17 17 H 1.07995 * 126.52733 * 60.77879 * 11 9 7 18 18 H 1.08002 * 125.23452 * 179.97438 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6964 -1.2125 5 1 1.2840 2.7465 -0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0017 10 1 0.5985 -2.5546 0.8730 11 6 2.2194 -3.6590 0.0027 12 6 1.9912 -4.3555 -1.1077 13 6 0.9140 -3.7201 -1.8716 14 8 0.4826 -4.1209 -2.9347 15 8 0.4700 -2.6294 -1.2192 16 1 -0.4850 0.8400 -0.0004 17 1 2.9566 -3.8802 0.7603 18 1 2.5216 -5.2487 -1.4031 RHF calculation, no. of doubly occupied orbitals= 27 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000075520483.mol2 18 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:05:03 Heat of formation + Delta-G solvation = -62.873990 kcal Electronic energy + Delta-G solvation = -7984.035400 eV Core-core repulsion = 6174.332162 eV Total energy + Delta-G solvation = -1809.703238 eV No. of doubly occupied orbitals = 27 Molecular weight (most abundant/longest-lived isotopes) = 154.042 amu Computer time = 0.06 seconds Orbital eigenvalues (eV) -39.87169 -36.24436 -32.88605 -32.11177 -27.72637 -23.71945 -20.83775 -19.81579 -17.03214 -16.04887 -14.95484 -14.84644 -14.07875 -13.19956 -12.58498 -12.23544 -11.99418 -11.04666 -10.89825 -10.60130 -9.99544 -9.53684 -9.26821 -8.88820 -8.56081 -6.35314 -4.56316 1.92401 3.17277 3.23374 3.25167 3.89933 4.18581 4.57245 4.96726 5.26322 5.42072 6.12388 6.33367 6.71801 6.99331 7.53959 7.67180 8.10908 8.57482 8.60900 9.19481 10.71136 Molecular weight = 154.04amu Principal moments of inertia in cm(-1) A = 0.091268 B = 0.018940 C = 0.017565 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 306.716271 B = 1477.987308 C = 1593.685613 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.853 5.853 2 C 0.080 3.920 3 Si 0.909 3.091 4 H -0.272 1.272 5 H -0.282 1.282 6 H -0.271 1.271 7 C -0.547 4.547 8 H 0.074 0.926 9 C 0.199 3.801 10 H 0.090 0.910 11 C -0.080 4.080 12 C -0.280 4.280 13 C 0.483 3.517 14 O -0.514 6.514 15 O -0.304 6.304 16 H 0.271 0.729 17 H 0.154 0.846 18 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.352 -2.519 2.979 5.844 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.487 5.487 2 C -0.129 4.129 3 Si 0.735 3.265 4 H -0.197 1.197 5 H -0.207 1.207 6 H -0.196 1.196 7 C -0.583 4.583 8 H 0.092 0.908 9 C 0.146 3.854 10 H 0.107 0.893 11 C -0.099 4.099 12 C -0.300 4.300 13 C 0.329 3.671 14 O -0.407 6.407 15 O -0.218 6.218 16 H 0.081 0.919 17 H 0.172 0.828 18 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 3.784 -2.402 2.471 5.118 hybrid contribution 0.620 0.719 0.032 0.950 sum 4.404 -1.683 2.503 5.338 Atomic orbital electron populations 1.69994 1.06315 1.28071 1.44357 1.25171 0.94984 1.00085 0.92643 0.86391 0.79563 0.81511 0.79078 1.19695 1.20744 1.19598 1.20881 0.93229 0.88385 1.55843 0.90812 1.20570 0.88434 0.92872 0.83486 0.89255 1.25247 0.95634 0.93332 0.95675 1.23747 1.03307 1.03858 0.99065 1.21500 0.81267 0.79918 0.84400 1.90720 1.62752 1.66059 1.21197 1.87820 1.56671 1.40974 1.36317 0.91882 0.82812 0.83878 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -24.10 13.01 55.43 0.72 -23.38 13 2 C 0.08 2.14 5.43 -17.82 -0.10 2.04 13 3 Si 0.91 20.15 29.54 -169.99 -5.02 15.13 13 4 H -0.27 -6.05 7.11 56.52 0.40 -5.65 13 5 H -0.28 -6.20 7.11 56.52 0.40 -5.80 13 6 H -0.27 -5.76 7.11 56.52 0.40 -5.36 13 7 C -0.55 -14.27 8.82 -34.44 -0.30 -14.58 13 8 H 0.07 1.82 7.76 -52.49 -0.41 1.41 13 9 C 0.20 4.85 3.46 -28.84 -0.10 4.75 13 10 H 0.09 2.18 8.14 -51.93 -0.42 1.76 13 11 C -0.08 -1.53 10.46 -35.92 -0.38 -1.91 13 12 C -0.28 -5.55 10.86 -38.04 -0.41 -5.96 13 13 C 0.48 12.06 8.56 34.08 0.29 12.35 13 14 O -0.51 -13.87 18.04 -18.94 -0.34 -14.21 13 15 O -0.30 -8.34 10.57 -39.92 -0.42 -8.76 13 16 H 0.27 7.19 8.31 -40.82 -0.34 6.85 13 17 H 0.15 2.26 8.06 -52.49 -0.42 1.84 13 18 H 0.14 2.34 8.06 -52.49 -0.42 1.91 13 LS Contribution 180.40 15.07 2.72 2.72 Total: -1.00 -30.68 180.40 -4.15 -34.83 By element: Atomic # 1 Polarization: -2.21 SS G_CDS: -0.81 Total: -3.02 kcal Atomic # 6 Polarization: -2.30 SS G_CDS: -1.00 Total: -3.30 kcal Atomic # 7 Polarization: -24.10 SS G_CDS: 0.72 Total: -23.38 kcal Atomic # 8 Polarization: -22.21 SS G_CDS: -0.76 Total: -22.97 kcal Atomic # 14 Polarization: 20.15 SS G_CDS: -5.02 Total: 15.13 kcal Total LS contribution 2.72 Total: 2.72 kcal Total: -30.68 -4.15 -34.83 kcal The number of atoms in the molecule is 18 The average number of expansion shells was 13.00 The maximum number of expansion shells was 13 The minimum number of expansion shells was 13 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075520483.mol2 18 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.042 kcal (2) G-P(sol) polarization free energy of solvation -30.680 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.722 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.152 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.832 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.874 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.06 seconds