Wall clock time and date at job start Mon Mar 30 2020 02:10:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86804 * 119.99499 * 2 1 4 4 H 1.48501 * 109.46995 * 240.00284 * 3 2 1 5 5 H 1.48499 * 109.47258 * 0.02562 * 3 2 1 6 6 H 1.48495 * 109.46872 * 120.00379 * 3 2 1 7 7 C 1.37871 * 120.00387 * 180.02562 * 2 1 3 8 8 H 1.08006 * 120.00231 * 179.97438 * 7 2 1 9 9 C 1.50704 * 119.99974 * 359.97438 * 7 2 1 10 10 H 1.09002 * 110.34534 * 300.70109 * 9 7 2 11 11 C 1.51108 * 110.48166 * 63.05424 * 9 7 2 12 12 C 1.30528 * 111.09990 * 135.29882 * 11 9 7 13 13 C 1.51102 * 111.10594 * 359.97438 * 12 11 9 14 14 C 1.54627 * 104.72724 * 343.56243 * 13 12 11 15 15 H 1.09006 * 111.07285 * 142.67787 * 14 13 12 16 16 O 1.42898 * 111.04094 * 266.60310 * 14 13 12 17 17 H 0.97001 * 120.00447 * 359.97438 * 1 2 3 18 18 H 1.07991 * 124.45026 * 315.27610 * 11 9 7 19 19 H 1.07999 * 124.44339 * 179.97438 * 12 11 9 20 20 H 1.09002 * 110.38610 * 224.74720 * 13 12 11 21 21 H 1.08999 * 110.38698 * 102.38025 * 13 12 11 22 22 H 0.96699 * 113.99993 * 292.02265 * 16 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6179 0.0000 4 1 3.1027 1.6966 -1.2126 5 1 1.2840 2.7465 0.0006 6 1 3.1028 1.6965 1.2124 7 6 2.0046 -1.1940 -0.0005 8 1 3.0847 -1.1939 -0.0010 9 6 1.2512 -2.4991 -0.0005 10 1 0.6101 -2.5667 0.8785 11 6 0.4308 -2.6361 -1.2621 12 6 0.5505 -3.8312 -1.7730 13 6 1.4710 -4.6904 -0.9377 14 6 2.2373 -3.6897 -0.0420 15 1 2.3976 -4.0996 0.9553 16 8 3.4770 -3.3090 -0.6423 17 1 -0.4851 0.8400 0.0004 18 1 -0.1752 -1.8487 -1.6853 19 1 0.0564 -4.1625 -2.6744 20 1 2.1648 -5.2363 -1.5770 21 1 0.8928 -5.3825 -0.3255 22 1 4.1268 -4.0235 -0.6899 RHF calculation, no. of doubly occupied orbitals= 28 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000075520676.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:10:01 Heat of formation + Delta-G solvation = -34.266701 kcal Electronic energy + Delta-G solvation = -8304.397477 eV Core-core repulsion = 6631.767839 eV Total energy + Delta-G solvation = -1672.629638 eV No. of doubly occupied orbitals = 28 Molecular weight (most abundant/longest-lived isotopes) = 154.073 amu Computer time = 0.09 seconds Orbital eigenvalues (eV) -38.01411 -34.11814 -32.35846 -27.87501 -26.91761 -23.60979 -19.52557 -17.96242 -16.47184 -15.81969 -14.78773 -14.16245 -13.56112 -12.12764 -11.99116 -11.69933 -11.23790 -10.95523 -10.68463 -10.35549 -10.05834 -9.38874 -9.14525 -8.94899 -8.34860 -7.61069 -5.93906 -3.93867 3.38992 3.42587 3.47038 3.62150 4.52893 5.25590 5.41767 5.66797 5.82881 6.09087 6.38153 6.49294 6.68779 6.96716 7.34242 7.62724 7.77788 8.06089 8.12720 8.46509 8.68921 9.12972 9.68851 11.15834 Molecular weight = 154.07amu Principal moments of inertia in cm(-1) A = 0.079801 B = 0.020835 C = 0.017824 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 350.790682 B = 1343.585306 C = 1570.579784 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.054 3.946 3 Si 0.895 3.105 4 H -0.277 1.277 5 H -0.289 1.289 6 H -0.278 1.278 7 C -0.490 4.490 8 H 0.071 0.929 9 C 0.061 3.939 10 H 0.050 0.950 11 C -0.064 4.064 12 C -0.262 4.262 13 C -0.115 4.115 14 C 0.098 3.902 15 H 0.046 0.954 16 O -0.538 6.538 17 H 0.259 0.741 18 H 0.119 0.881 19 H 0.100 0.900 20 H 0.052 0.948 21 H 0.059 0.941 22 H 0.349 0.651 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.578 -5.645 -0.687 6.243 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.147 4.147 3 Si 0.724 3.276 4 H -0.203 1.203 5 H -0.215 1.215 6 H -0.203 1.203 7 C -0.528 4.528 8 H 0.089 0.911 9 C 0.043 3.957 10 H 0.067 0.933 11 C -0.082 4.082 12 C -0.280 4.280 13 C -0.152 4.152 14 C 0.039 3.961 15 H 0.064 0.936 16 O -0.340 6.340 17 H 0.069 0.931 18 H 0.137 0.863 19 H 0.118 0.882 20 H 0.071 0.929 21 H 0.078 0.922 22 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges 2.110 -4.928 -0.722 5.409 hybrid contribution 0.553 0.350 -0.113 0.664 sum 2.663 -4.579 -0.835 5.362 Atomic orbital electron populations 1.69966 1.05898 1.26554 1.51474 1.25039 0.94895 0.99211 0.95518 0.86601 0.79485 0.82936 0.78624 1.20313 1.21516 1.20338 1.21029 0.93737 0.89244 1.48818 0.91130 1.18777 0.90939 0.92652 0.93352 0.93291 1.23704 0.93465 0.94278 0.96793 1.22750 1.06337 0.97229 1.01688 1.21888 0.97814 0.97758 0.97790 1.22769 0.84747 0.96222 0.92397 0.93602 1.86801 1.24826 1.38644 1.83754 0.93098 0.86278 0.88182 0.92895 0.92234 0.80720 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.49 12.13 55.43 0.67 -25.82 14 2 C 0.05 1.54 5.33 -17.82 -0.10 1.45 14 3 Si 0.90 22.22 29.54 -169.99 -5.02 17.20 14 4 H -0.28 -6.88 7.11 56.52 0.40 -6.47 14 5 H -0.29 -7.07 7.11 56.52 0.40 -6.66 14 6 H -0.28 -6.78 7.11 56.52 0.40 -6.38 14 7 C -0.49 -14.19 8.20 -34.44 -0.28 -14.48 14 8 H 0.07 2.08 6.69 -52.48 -0.35 1.73 14 9 C 0.06 1.60 2.79 -91.85 -0.26 1.34 14 10 H 0.05 1.36 8.14 -51.93 -0.42 0.94 14 11 C -0.06 -1.62 9.41 -35.69 -0.34 -1.96 14 12 C -0.26 -5.73 10.77 -35.70 -0.38 -6.11 14 13 C -0.11 -2.23 6.57 -26.83 -0.18 -2.41 14 14 C 0.10 2.13 4.36 -25.01 -0.11 2.02 14 15 H 0.05 0.91 8.14 -51.93 -0.42 0.49 14 16 O -0.54 -11.69 11.69 -35.23 -0.41 -12.11 14 17 H 0.26 7.29 8.31 -40.82 -0.34 6.96 14 18 H 0.12 3.21 7.37 -52.49 -0.39 2.83 14 19 H 0.10 1.96 8.06 -52.49 -0.42 1.54 14 20 H 0.05 0.92 8.11 -51.93 -0.42 0.50 14 21 H 0.06 1.04 8.14 -51.93 -0.42 0.62 14 22 H 0.35 5.46 9.12 45.56 0.42 5.87 14 LS Contribution 194.19 15.07 2.93 2.93 Total: -1.00 -30.95 194.19 -5.04 -36.00 By element: Atomic # 1 Polarization: 3.51 SS G_CDS: -1.57 Total: 1.94 kcal Atomic # 6 Polarization: -18.50 SS G_CDS: -1.64 Total: -20.14 kcal Atomic # 7 Polarization: -26.49 SS G_CDS: 0.67 Total: -25.82 kcal Atomic # 8 Polarization: -11.69 SS G_CDS: -0.41 Total: -12.11 kcal Atomic # 14 Polarization: 22.22 SS G_CDS: -5.02 Total: 17.20 kcal Total LS contribution 2.93 Total: 2.93 kcal Total: -30.95 -5.04 -36.00 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075520676.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.730 kcal (2) G-P(sol) polarization free energy of solvation -30.954 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.224 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.043 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.997 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.267 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.09 seconds