Wall clock time and date at job start Mon Mar 30 2020 02:10:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86805 * 120.00175 * 2 1 4 4 H 1.48498 * 109.46909 * 269.72379 * 3 2 1 5 5 H 1.48497 * 109.46701 * 29.72288 * 3 2 1 6 6 H 1.48500 * 109.46867 * 149.72394 * 3 2 1 7 7 C 1.37885 * 119.99913 * 179.72292 * 2 1 3 8 8 H 1.08000 * 119.99535 * 180.02562 * 7 2 1 9 9 C 1.50694 * 119.99902 * 0.02562 * 7 2 1 10 10 H 1.09003 * 110.34691 * 299.16712 * 9 7 2 11 11 C 1.51106 * 110.38976 * 61.45528 * 9 7 2 12 12 C 1.30516 * 111.10657 * 102.37209 * 11 9 7 13 13 C 1.51104 * 111.10707 * 359.97438 * 12 11 9 14 14 C 1.54635 * 110.38596 * 176.75438 * 9 7 2 15 15 H 1.08996 * 111.03631 * 23.85464 * 14 9 7 16 16 O 1.42909 * 111.03637 * 147.78820 * 14 9 7 17 17 H 0.97001 * 119.99646 * 0.28069 * 1 2 3 18 18 H 1.08000 * 124.44343 * 282.35250 * 11 9 7 19 19 H 1.07998 * 124.44941 * 180.02562 * 12 11 9 20 20 H 1.09004 * 110.38386 * 135.24424 * 13 12 11 21 21 H 1.08994 * 110.39080 * 257.62491 * 13 12 11 22 22 H 0.96697 * 113.99559 * 179.97438 * 16 14 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.5026 2.0430 -1.4001 5 1 1.4437 2.6543 0.6942 6 1 3.5438 1.4418 0.7059 7 6 2.0046 -1.1941 0.0058 8 1 3.0846 -1.1940 0.0062 9 6 1.2511 -2.4991 0.0115 10 1 0.6298 -2.5742 0.9040 11 6 0.4022 -2.6224 -1.2325 12 6 0.9584 -3.4188 -2.1041 13 6 2.2714 -3.9592 -1.5871 14 6 2.2350 -3.6896 -0.0647 15 1 3.2203 -3.4072 0.3060 16 8 1.7271 -4.8211 0.6452 17 1 -0.4850 0.8401 -0.0041 18 1 -0.5412 -2.1178 -1.3807 19 1 0.5362 -3.6594 -3.0685 20 1 2.3443 -5.0294 -1.7810 21 1 3.1068 -3.4314 -2.0470 22 1 2.3102 -5.5923 0.6248 RHF calculation, no. of doubly occupied orbitals= 28 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000075520684.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:10:05 Heat of formation + Delta-G solvation = -60.479375 kcal Electronic energy + Delta-G solvation = -8271.012226 eV Core-core repulsion = 6597.245922 eV Total energy + Delta-G solvation = -1673.766305 eV No. of doubly occupied orbitals = 28 Molecular weight (most abundant/longest-lived isotopes) = 154.073 amu Computer time = 0.08 seconds Orbital eigenvalues (eV) -39.81773 -36.09506 -34.37291 -29.85676 -28.64383 -25.84028 -21.32636 -19.70470 -18.86719 -17.28583 -16.91701 -16.23558 -15.26235 -14.34063 -13.91580 -13.14986 -13.07367 -12.82378 -12.55722 -12.34495 -12.06633 -11.46322 -11.17989 -10.72590 -10.56127 -9.46122 -8.17211 -6.30510 1.40940 1.41862 1.52849 1.80986 2.40434 3.14067 3.65055 4.00874 4.11426 4.53456 4.72075 4.96418 5.06075 5.24696 5.46558 5.51011 5.73437 5.94926 6.18974 6.41393 6.80430 7.11697 7.37302 8.91729 Molecular weight = 154.07amu Principal moments of inertia in cm(-1) A = 0.080493 B = 0.019030 C = 0.018208 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 347.772332 B = 1471.014289 C = 1537.431351 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C 0.009 3.991 3 Si 0.967 3.033 4 H -0.273 1.273 5 H -0.283 1.283 6 H -0.263 1.263 7 C -0.528 4.528 8 H 0.065 0.935 9 C 0.057 3.943 10 H -0.008 1.008 11 C -0.114 4.114 12 C -0.222 4.222 13 C -0.101 4.101 14 C 0.098 3.902 15 H 0.064 0.936 16 O -0.580 6.580 17 H 0.263 0.737 18 H 0.089 0.911 19 H 0.128 0.872 20 H 0.087 0.913 21 H 0.078 0.922 22 H 0.387 0.613 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.214 -4.897 -2.666 7.634 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.559 5.559 2 C -0.190 4.190 3 Si 0.791 3.209 4 H -0.198 1.198 5 H -0.209 1.209 6 H -0.187 1.187 7 C -0.566 4.566 8 H 0.083 0.917 9 C 0.039 3.961 10 H 0.010 0.990 11 C -0.132 4.132 12 C -0.240 4.240 13 C -0.138 4.138 14 C 0.040 3.960 15 H 0.082 0.918 16 O -0.388 6.388 17 H 0.071 0.929 18 H 0.107 0.893 19 H 0.146 0.854 20 H 0.106 0.894 21 H 0.096 0.904 22 H 0.236 0.764 Dipole moment (debyes) X Y Z Total from point charges 4.579 -4.376 -2.540 6.825 hybrid contribution 0.319 0.728 -0.049 0.796 sum 4.899 -3.649 -2.589 6.634 Atomic orbital electron populations 1.70130 1.07603 1.27575 1.50578 1.25900 0.95804 1.03019 0.94304 0.85421 0.78668 0.78355 0.78434 1.19810 1.20890 1.18683 1.21298 0.93064 0.90623 1.51583 0.91721 1.18611 0.92565 0.92352 0.92589 0.99015 1.23298 0.97714 0.94162 0.98068 1.23120 0.98564 1.02530 0.99770 1.21781 0.96123 1.01058 0.94869 1.22764 0.96336 0.85825 0.91071 0.91790 1.86518 1.51194 1.24806 1.76292 0.92851 0.89317 0.85407 0.89426 0.90382 0.76371 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -55.17 12.24 21.45 0.26 -54.91 14 2 C 0.01 0.50 5.32 84.66 0.45 0.95 14 3 Si 0.97 43.94 29.54 68.60 2.03 45.96 14 4 H -0.27 -11.99 7.11 99.48 0.71 -11.29 14 5 H -0.28 -12.67 7.11 99.48 0.71 -11.96 14 6 H -0.26 -11.39 7.11 99.48 0.71 -10.68 14 7 C -0.53 -29.89 8.55 25.60 0.22 -29.68 14 8 H 0.06 3.49 7.56 -2.91 -0.02 3.46 14 9 C 0.06 3.12 2.60 -11.60 -0.03 3.09 14 10 H -0.01 -0.51 8.11 -2.39 -0.02 -0.53 14 11 C -0.11 -5.89 9.16 26.27 0.24 -5.65 14 12 C -0.22 -9.49 10.77 26.27 0.28 -9.21 14 13 C -0.10 -3.77 6.57 30.54 0.20 -3.57 14 14 C 0.10 4.23 4.06 31.71 0.13 4.36 14 15 H 0.06 2.63 7.72 -2.39 -0.02 2.61 14 16 O -0.58 -22.84 13.43 -148.98 -2.00 -24.84 14 17 H 0.26 14.85 8.31 -92.71 -0.77 14.08 14 18 H 0.09 4.93 7.69 -2.91 -0.02 4.90 14 19 H 0.13 4.68 8.06 -2.91 -0.02 4.66 14 20 H 0.09 2.63 8.11 -2.39 -0.02 2.61 14 21 H 0.08 2.77 8.14 -2.39 -0.02 2.75 14 22 H 0.39 10.08 9.12 -74.06 -0.68 9.41 14 Total: -1.00 -65.78 196.37 2.31 -63.47 By element: Atomic # 1 Polarization: 9.49 SS G_CDS: 0.53 Total: 10.02 kcal Atomic # 6 Polarization: -41.19 SS G_CDS: 1.49 Total: -39.70 kcal Atomic # 7 Polarization: -55.17 SS G_CDS: 0.26 Total: -54.91 kcal Atomic # 8 Polarization: -22.84 SS G_CDS: -2.00 Total: -24.84 kcal Atomic # 14 Polarization: 43.94 SS G_CDS: 2.03 Total: 45.96 kcal Total: -65.78 2.31 -63.47 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075520684.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.990 kcal (2) G-P(sol) polarization free energy of solvation -65.780 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.790 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.311 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.469 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.479 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.08 seconds