Wall clock time and date at job start Mon Mar 30 2020 02:10:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86800 * 119.99866 * 2 1 4 4 H 1.48507 * 109.46922 * 239.99651 * 3 2 1 5 5 H 1.48497 * 109.47430 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.47031 * 120.00086 * 3 2 1 7 7 C 1.37878 * 119.99984 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99717 * 180.02562 * 7 2 1 9 9 C 1.50700 * 119.99797 * 0.02562 * 7 2 1 10 10 H 1.08996 * 110.43482 * 60.89689 * 9 7 2 11 11 C 1.51101 * 110.38620 * 298.54518 * 9 7 2 12 12 C 1.30525 * 111.10317 * 224.50536 * 11 9 7 13 13 C 1.51099 * 111.10506 * 0.25074 * 12 11 9 14 14 C 1.54635 * 104.72863 * 16.42949 * 13 12 11 15 15 H 1.08994 * 111.04240 * 217.33579 * 14 13 12 16 16 O 1.42899 * 111.03286 * 93.43980 * 14 13 12 17 17 H 0.97008 * 120.00276 * 0.02562 * 1 2 3 18 18 H 1.08002 * 124.45105 * 44.78068 * 11 9 7 19 19 H 1.07999 * 124.44852 * 180.22364 * 12 11 9 20 20 H 1.08999 * 110.39225 * 135.24698 * 13 12 11 21 21 H 1.09001 * 110.38605 * 257.50906 * 13 12 11 22 22 H 0.96700 * 114.00205 * 61.45790 * 16 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2841 2.7465 -0.0006 6 1 3.1028 1.6964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2509 -2.4991 0.0005 10 1 0.6308 -2.5805 -0.8921 11 6 0.4011 -2.6162 1.2444 12 6 0.5043 -3.8048 1.7738 13 6 1.4448 -4.6766 0.9748 14 6 2.2371 -3.6893 0.0867 15 1 2.4224 -4.1129 -0.9003 16 8 3.4615 -3.3040 0.7145 17 1 -0.4851 0.8401 -0.0004 18 1 -0.2145 -1.8223 1.6408 19 1 -0.0142 -4.1233 2.6661 20 1 2.1201 -5.2155 1.6393 21 1 0.8815 -5.3768 0.3578 22 1 4.0679 -4.0391 0.8784 RHF calculation, no. of doubly occupied orbitals= 28 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000075520688.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:10:07 Heat of formation + Delta-G solvation = -56.301600 kcal Electronic energy + Delta-G solvation = -8308.137218 eV Core-core repulsion = 6634.552075 eV Total energy + Delta-G solvation = -1673.585143 eV No. of doubly occupied orbitals = 28 Molecular weight (most abundant/longest-lived isotopes) = 154.073 amu Computer time = 0.08 seconds Orbital eigenvalues (eV) -39.76707 -35.85837 -34.45664 -29.87004 -28.61680 -25.65381 -21.30771 -19.86089 -18.29537 -17.61516 -16.82826 -16.04270 -15.26805 -14.06277 -13.85594 -13.47322 -13.11885 -12.76416 -12.58635 -12.23440 -11.99063 -11.42546 -10.90859 -10.69267 -10.50653 -9.44379 -8.10660 -6.17967 1.39894 1.42511 1.50456 1.78176 2.45650 3.19676 3.73952 4.01460 4.11874 4.50776 4.73638 4.95672 5.07644 5.21873 5.40309 5.67729 5.84435 5.92190 6.23250 6.48136 6.91639 7.24732 7.50552 8.97779 Molecular weight = 154.07amu Principal moments of inertia in cm(-1) A = 0.079812 B = 0.020887 C = 0.017850 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 350.738940 B = 1340.226954 C = 1568.224234 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.925 5.925 2 C 0.003 3.997 3 Si 0.957 3.043 4 H -0.270 1.270 5 H -0.283 1.283 6 H -0.276 1.276 7 C -0.510 4.510 8 H 0.059 0.941 9 C 0.045 3.955 10 H 0.019 0.981 11 C -0.114 4.114 12 C -0.227 4.227 13 C -0.109 4.109 14 C 0.101 3.899 15 H 0.064 0.936 16 O -0.563 6.563 17 H 0.260 0.740 18 H 0.090 0.910 19 H 0.128 0.872 20 H 0.086 0.914 21 H 0.088 0.912 22 H 0.378 0.622 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.378 -6.850 1.406 7.766 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.195 4.195 3 Si 0.783 3.217 4 H -0.195 1.195 5 H -0.208 1.208 6 H -0.201 1.201 7 C -0.548 4.548 8 H 0.077 0.923 9 C 0.027 3.973 10 H 0.037 0.963 11 C -0.133 4.133 12 C -0.245 4.245 13 C -0.146 4.146 14 C 0.042 3.958 15 H 0.082 0.918 16 O -0.370 6.370 17 H 0.068 0.932 18 H 0.108 0.892 19 H 0.145 0.855 20 H 0.105 0.895 21 H 0.106 0.894 22 H 0.225 0.775 Dipole moment (debyes) X Y Z Total from point charges 2.958 -6.143 1.359 6.952 hybrid contribution 0.247 0.626 0.051 0.675 sum 3.205 -5.516 1.409 6.534 Atomic orbital electron populations 1.70093 1.07136 1.27177 1.52145 1.25823 0.95785 1.02564 0.95292 0.85625 0.78343 0.78990 0.78745 1.19500 1.20805 1.20105 1.21304 0.93408 0.91157 1.48893 0.92307 1.18824 0.91807 0.93832 0.92811 0.96308 1.23421 0.96308 0.95699 0.97874 1.23221 1.03838 0.95903 1.01529 1.21924 0.97574 0.97138 0.97937 1.22654 0.84560 0.94588 0.93995 0.91838 1.86705 1.29391 1.38079 1.82794 0.93158 0.89217 0.85464 0.89522 0.89420 0.77471 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.95 11.98 21.45 0.26 -55.70 14 2 C 0.00 0.16 5.32 84.66 0.45 0.61 14 3 Si 0.96 46.13 29.54 68.60 2.03 48.15 14 4 H -0.27 -12.55 7.11 99.48 0.71 -11.85 14 5 H -0.28 -13.19 7.11 99.48 0.71 -12.48 14 6 H -0.28 -13.09 7.11 99.48 0.71 -12.38 14 7 C -0.51 -30.03 8.20 25.60 0.21 -29.82 14 8 H 0.06 3.51 6.73 -2.91 -0.02 3.49 14 9 C 0.05 2.41 2.84 -11.54 -0.03 2.38 14 10 H 0.02 1.10 8.14 -2.39 -0.02 1.08 14 11 C -0.11 -5.84 9.36 26.26 0.25 -5.59 14 12 C -0.23 -9.32 10.77 26.26 0.28 -9.04 14 13 C -0.11 -3.75 6.56 30.53 0.20 -3.55 14 14 C 0.10 4.20 4.36 31.77 0.14 4.34 14 15 H 0.06 2.39 8.14 -2.39 -0.02 2.37 14 16 O -0.56 -23.28 11.74 -148.98 -1.75 -25.03 14 17 H 0.26 14.92 8.31 -92.70 -0.77 14.15 14 18 H 0.09 5.05 7.24 -2.91 -0.02 5.03 14 19 H 0.13 4.50 8.06 -2.91 -0.02 4.47 14 20 H 0.09 2.48 8.11 -2.39 -0.02 2.46 14 21 H 0.09 2.63 8.14 -2.39 -0.02 2.61 14 22 H 0.38 10.57 9.11 -74.06 -0.67 9.90 14 Total: -1.00 -66.97 193.97 2.56 -64.41 By element: Atomic # 1 Polarization: 8.31 SS G_CDS: 0.53 Total: 8.84 kcal Atomic # 6 Polarization: -42.17 SS G_CDS: 1.50 Total: -40.68 kcal Atomic # 7 Polarization: -55.95 SS G_CDS: 0.26 Total: -55.70 kcal Atomic # 8 Polarization: -23.28 SS G_CDS: -1.75 Total: -25.03 kcal Atomic # 14 Polarization: 46.13 SS G_CDS: 2.03 Total: 48.15 kcal Total: -66.97 2.56 -64.41 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075520688.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.104 kcal (2) G-P(sol) polarization free energy of solvation -66.970 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.865 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.564 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.406 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.302 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.08 seconds