Wall clock time and date at job start Mon Mar 30 2020 02:11:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86795 * 120.00074 * 2 1 4 4 H 1.48503 * 109.47261 * 270.00384 * 3 2 1 5 5 H 1.48500 * 109.47479 * 30.00311 * 3 2 1 6 6 H 1.48497 * 109.47287 * 150.00152 * 3 2 1 7 7 C 1.37879 * 120.00009 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99487 * 359.97438 * 7 2 1 9 9 C 1.50698 * 120.00052 * 179.97438 * 7 2 1 10 10 H 1.08996 * 110.34244 * 60.83218 * 9 7 2 11 11 C 1.51104 * 110.38731 * 298.54365 * 9 7 2 12 12 C 1.30527 * 111.10523 * 224.88294 * 11 9 7 13 13 C 1.51104 * 111.10149 * 359.61668 * 12 11 9 14 14 H 1.09003 * 110.57549 * 257.92824 * 13 12 11 15 15 O 1.42897 * 110.34731 * 135.56539 * 13 12 11 16 16 C 1.54635 * 104.67244 * 16.80267 * 13 12 11 17 17 H 0.96999 * 119.99724 * 359.97438 * 1 2 3 18 18 H 1.08002 * 124.44506 * 44.61303 * 11 9 7 19 19 H 1.07991 * 124.44863 * 179.73328 * 12 11 9 20 20 H 0.96695 * 113.99948 * 64.78805 * 15 13 12 21 21 H 1.09000 * 111.04132 * 217.14124 * 16 13 12 22 22 H 1.08999 * 111.07124 * 93.22308 * 16 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4468 2.6527 0.7001 6 1 3.5468 1.4401 0.7000 7 6 2.0046 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5116 -1.1941 -0.0011 10 1 3.8908 -0.6962 0.8912 11 6 4.0375 -0.5170 -1.2454 12 6 5.0098 -1.2049 -1.7795 13 6 5.3006 -2.4506 -0.9752 14 1 6.1898 -2.3107 -0.3604 15 8 5.4679 -3.5740 -1.8423 16 6 4.0526 -2.6404 -0.0821 17 1 -0.4850 0.8401 0.0004 18 1 3.6559 0.4117 -1.6432 19 1 5.5383 -0.9200 -2.6771 20 1 6.2361 -3.5094 -2.4260 21 1 4.3303 -3.0102 0.9049 22 1 3.3286 -3.3031 -0.5562 RHF calculation, no. of doubly occupied orbitals= 28 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000075520692.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:11:51 Heat of formation + Delta-G solvation = -32.914349 kcal Electronic energy + Delta-G solvation = -8213.631015 eV Core-core repulsion = 6541.060020 eV Total energy + Delta-G solvation = -1672.570996 eV No. of doubly occupied orbitals = 28 Molecular weight (most abundant/longest-lived isotopes) = 154.073 amu Computer time = 0.07 seconds Orbital eigenvalues (eV) -38.34011 -34.93092 -32.27989 -28.62013 -27.36417 -23.12981 -19.64293 -18.83770 -17.09955 -15.92485 -15.57194 -14.34748 -13.51258 -12.73423 -12.46348 -12.04983 -11.23959 -10.84888 -10.78639 -10.49831 -10.00106 -9.72265 -9.46618 -9.42637 -8.58449 -8.08906 -6.10353 -4.09238 3.00420 3.24133 3.34461 3.37480 4.37748 4.89125 5.18705 5.49454 5.56537 5.72741 6.15106 6.30548 6.55670 6.72356 6.96663 7.19318 7.28738 7.58823 7.76649 8.11520 8.48929 8.93884 9.50805 11.02715 Molecular weight = 154.07amu Principal moments of inertia in cm(-1) A = 0.088316 B = 0.019864 C = 0.017564 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 316.966688 B = 1409.279695 C = 1593.782538 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.069 3.931 3 Si 0.881 3.119 4 H -0.278 1.278 5 H -0.292 1.292 6 H -0.263 1.263 7 C -0.508 4.508 8 H 0.077 0.923 9 C 0.024 3.976 10 H 0.044 0.956 11 C -0.109 4.109 12 C -0.255 4.255 13 C 0.129 3.871 14 H 0.053 0.947 15 O -0.566 6.566 16 C -0.098 4.098 17 H 0.264 0.736 18 H 0.110 0.890 19 H 0.110 0.890 20 H 0.366 0.634 21 H 0.062 0.938 22 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.984 -0.576 -1.721 10.147 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.133 4.133 3 Si 0.710 3.290 4 H -0.205 1.205 5 H -0.219 1.219 6 H -0.187 1.187 7 C -0.545 4.545 8 H 0.096 0.904 9 C 0.006 3.994 10 H 0.062 0.938 11 C -0.127 4.127 12 C -0.274 4.274 13 C 0.071 3.929 14 H 0.070 0.930 15 O -0.371 6.371 16 C -0.135 4.135 17 H 0.074 0.926 18 H 0.127 0.873 19 H 0.128 0.872 20 H 0.211 0.789 21 H 0.081 0.919 22 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 9.262 -0.670 -1.385 9.389 hybrid contribution 0.829 1.324 -0.514 1.645 sum 10.092 0.655 -1.899 10.290 Atomic orbital electron populations 1.69902 1.06264 1.27012 1.50464 1.25043 0.94741 0.99082 0.94432 0.86923 0.80366 0.83624 0.78096 1.20500 1.21891 1.18725 1.21032 0.88090 0.94733 1.50673 0.90449 1.19166 0.97290 0.90849 0.92117 0.93818 1.23985 0.92499 0.97761 0.98467 1.23544 1.02383 0.99732 1.01709 1.21745 0.98036 0.83275 0.89850 0.92967 1.86579 1.51548 1.43947 1.55022 1.22496 0.94695 0.99136 0.97186 0.92569 0.87278 0.87221 0.78894 0.91908 0.90287 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.67 13.96 55.43 0.77 -26.90 14 2 C 0.07 2.00 5.45 -17.82 -0.10 1.90 14 3 Si 0.88 21.68 24.70 -169.99 -4.20 17.48 14 4 H -0.28 -6.64 6.77 56.52 0.38 -6.26 14 5 H -0.29 -7.16 7.11 56.52 0.40 -6.76 14 6 H -0.26 -6.17 6.57 56.52 0.37 -5.79 14 7 C -0.51 -14.56 9.12 -34.44 -0.31 -14.87 14 8 H 0.08 2.40 7.88 -52.48 -0.41 1.99 14 9 C 0.02 0.59 2.37 -91.87 -0.22 0.37 14 10 H 0.04 1.06 7.29 -51.93 -0.38 0.68 14 11 C -0.11 -2.46 8.62 -35.70 -0.31 -2.77 14 12 C -0.26 -4.99 10.45 -35.70 -0.37 -5.36 14 13 C 0.13 2.40 4.26 -26.83 -0.11 2.29 14 14 H 0.05 0.86 8.14 -51.93 -0.42 0.44 14 15 O -0.57 -9.90 13.36 -35.23 -0.47 -10.37 14 16 C -0.10 -2.09 6.42 -25.01 -0.16 -2.25 14 17 H 0.26 7.60 8.31 -40.82 -0.34 7.27 14 18 H 0.11 2.51 5.11 -52.49 -0.27 2.24 14 19 H 0.11 1.83 8.06 -52.49 -0.42 1.41 14 20 H 0.37 4.44 9.12 45.56 0.42 4.86 14 21 H 0.06 1.20 8.14 -51.93 -0.42 0.78 14 22 H 0.08 1.82 7.76 -51.93 -0.40 1.42 14 LS Contribution 188.96 15.07 2.85 2.85 Total: -1.00 -31.23 188.96 -4.13 -35.36 By element: Atomic # 1 Polarization: 3.76 SS G_CDS: -1.50 Total: 2.26 kcal Atomic # 6 Polarization: -19.10 SS G_CDS: -1.58 Total: -20.69 kcal Atomic # 7 Polarization: -27.67 SS G_CDS: 0.77 Total: -26.90 kcal Atomic # 8 Polarization: -9.90 SS G_CDS: -0.47 Total: -10.37 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -4.20 Total: 17.48 kcal Total LS contribution 2.85 Total: 2.85 kcal Total: -31.23 -4.13 -35.36 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075520692.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.445 kcal (2) G-P(sol) polarization free energy of solvation -31.226 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.781 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.133 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.359 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.914 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.07 seconds