Wall clock time and date at job start Mon Mar 30 2020 02:11:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31523 * 1 3 3 Si 1.86803 * 120.00010 * 2 1 4 4 H 1.48496 * 109.46918 * 269.99883 * 3 2 1 5 5 H 1.48501 * 109.46920 * 29.99858 * 3 2 1 6 6 H 1.48499 * 109.46891 * 149.99954 * 3 2 1 7 7 C 1.37880 * 119.99763 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99977 * 0.02562 * 7 2 1 9 9 C 1.50704 * 119.99673 * 179.97438 * 7 2 1 10 10 H 1.09001 * 110.34333 * 60.83777 * 9 7 2 11 11 C 1.51104 * 110.38853 * 298.54829 * 9 7 2 12 12 C 1.30527 * 111.10523 * 257.75569 * 11 9 7 13 13 C 1.51104 * 111.10149 * 359.61668 * 12 11 9 14 14 H 1.09001 * 110.19807 * 102.67841 * 13 12 11 15 15 O 1.42901 * 110.62050 * 224.97298 * 13 12 11 16 16 C 1.54632 * 110.48092 * 183.18836 * 9 7 2 17 17 H 0.97001 * 119.99953 * 359.97438 * 1 2 3 18 18 H 1.08002 * 124.44506 * 77.48579 * 11 9 7 19 19 H 1.07991 * 124.44863 * 179.73328 * 12 11 9 20 20 H 0.96703 * 114.00006 * 295.50496 * 15 13 12 21 21 H 1.09002 * 111.03487 * 212.25928 * 16 9 7 22 22 H 1.09001 * 111.03882 * 336.19944 * 16 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5468 1.4401 0.7001 7 6 2.0046 -1.1941 0.0005 8 1 1.4646 -2.1294 0.0005 9 6 3.5116 -1.1941 0.0000 10 1 3.8909 -0.6955 0.8919 11 6 4.0376 -0.5180 -1.2449 12 6 4.4430 -1.3964 -2.1211 13 6 4.2638 -2.8044 -1.6030 14 1 3.3881 -3.2651 -2.0603 15 8 5.4301 -3.5884 -1.8622 16 6 4.0527 -2.6405 -0.0799 17 1 -0.4850 0.8401 0.0004 18 1 4.0694 0.5514 -1.3921 19 1 4.8545 -1.1492 -3.0885 20 1 5.6119 -3.7241 -2.8023 21 1 4.9957 -2.7357 0.4584 22 1 3.3177 -3.3543 0.2923 RHF calculation, no. of doubly occupied orbitals= 28 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000075520697.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:11:54 Heat of formation + Delta-G solvation = -56.901648 kcal Electronic energy + Delta-G solvation = -8250.619359 eV Core-core repulsion = 6577.008196 eV Total energy + Delta-G solvation = -1673.611163 eV No. of doubly occupied orbitals = 28 Molecular weight (most abundant/longest-lived isotopes) = 154.073 amu Computer time = 0.09 seconds Orbital eigenvalues (eV) -39.96327 -36.46211 -34.34428 -30.33978 -28.98063 -25.36324 -21.24664 -20.52792 -18.69034 -17.98910 -17.26724 -16.10773 -15.09138 -14.84494 -13.85284 -13.81572 -13.03065 -12.66295 -12.44017 -12.23179 -11.83183 -11.77250 -11.51055 -10.95771 -10.69106 -9.72065 -8.32980 -6.37349 1.29598 1.33009 1.41954 1.52779 2.32450 3.02277 3.56329 3.84572 3.97472 4.27555 4.60175 4.64449 4.93891 5.05752 5.26524 5.33926 5.55015 5.65240 6.11478 6.23795 6.67859 6.97918 7.27641 8.83282 Molecular weight = 154.07amu Principal moments of inertia in cm(-1) A = 0.087374 B = 0.020325 C = 0.018324 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 320.383491 B = 1377.276649 C = 1527.707207 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.947 5.947 2 C 0.014 3.986 3 Si 0.943 3.057 4 H -0.263 1.263 5 H -0.292 1.292 6 H -0.245 1.245 7 C -0.511 4.511 8 H 0.038 0.962 9 C 0.022 3.978 10 H 0.033 0.967 11 C -0.155 4.155 12 C -0.213 4.213 13 C 0.138 3.862 14 H 0.059 0.941 15 O -0.574 6.574 16 C -0.100 4.100 17 H 0.267 0.733 18 H 0.111 0.889 19 H 0.147 0.853 20 H 0.392 0.608 21 H 0.075 0.925 22 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.615 -0.945 -4.273 10.564 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.587 5.587 2 C -0.184 4.184 3 Si 0.768 3.232 4 H -0.188 1.188 5 H -0.219 1.219 6 H -0.168 1.168 7 C -0.549 4.549 8 H 0.056 0.944 9 C 0.003 3.997 10 H 0.051 0.949 11 C -0.173 4.173 12 C -0.231 4.231 13 C 0.080 3.920 14 H 0.077 0.923 15 O -0.382 6.382 16 C -0.138 4.138 17 H 0.076 0.924 18 H 0.128 0.872 19 H 0.164 0.836 20 H 0.241 0.759 21 H 0.094 0.906 22 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 9.485 -0.867 -3.617 10.188 hybrid contribution -0.438 0.850 -0.584 1.121 sum 9.047 -0.017 -4.202 9.975 Atomic orbital electron populations 1.70042 1.08199 1.28197 1.52295 1.25901 0.95462 1.03126 0.93884 0.85891 0.79536 0.78567 0.79231 1.18806 1.21928 1.16824 1.21210 0.90171 0.93246 1.50273 0.94405 1.19060 0.93988 0.93199 0.93464 0.94903 1.23672 0.96097 0.98688 0.98886 1.23845 1.03488 0.95630 1.00093 1.21427 0.86986 0.88177 0.95404 0.92317 1.86476 1.46316 1.73719 1.31692 1.22369 1.00075 0.96808 0.94513 0.92393 0.87165 0.83590 0.75896 0.90646 0.91822 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.22 13.96 21.45 0.30 -58.92 14 2 C 0.01 0.80 5.45 84.65 0.46 1.26 14 3 Si 0.94 44.22 24.59 68.60 1.69 45.91 14 4 H -0.26 -11.61 7.02 99.48 0.70 -10.91 14 5 H -0.29 -13.61 7.11 99.48 0.71 -12.91 14 6 H -0.24 -10.69 6.57 99.48 0.65 -10.03 14 7 C -0.51 -29.35 9.14 25.60 0.23 -29.11 14 8 H 0.04 2.39 7.81 -2.91 -0.02 2.37 14 9 C 0.02 1.03 2.37 -11.60 -0.03 1.00 14 10 H 0.03 1.57 7.29 -2.39 -0.02 1.55 14 11 C -0.16 -6.60 8.45 26.26 0.22 -6.38 14 12 C -0.21 -7.77 10.46 26.26 0.27 -7.49 14 13 C 0.14 5.10 4.24 30.53 0.13 5.23 14 14 H 0.06 2.21 8.14 -2.39 -0.02 2.19 14 15 O -0.57 -17.83 13.38 -148.98 -1.99 -19.82 14 16 C -0.10 -4.16 6.44 31.71 0.20 -3.96 14 17 H 0.27 15.59 8.31 -92.71 -0.77 14.82 14 18 H 0.11 4.51 5.55 -2.91 -0.02 4.49 14 19 H 0.15 4.24 8.06 -2.92 -0.02 4.21 14 20 H 0.39 7.95 9.12 -74.06 -0.68 7.28 14 21 H 0.07 2.88 8.11 -2.39 -0.02 2.86 14 22 H 0.06 2.71 7.73 -2.39 -0.02 2.70 14 Total: -1.00 -65.63 189.28 1.97 -63.66 By element: Atomic # 1 Polarization: 8.14 SS G_CDS: 0.48 Total: 8.62 kcal Atomic # 6 Polarization: -40.95 SS G_CDS: 1.50 Total: -39.45 kcal Atomic # 7 Polarization: -59.22 SS G_CDS: 0.30 Total: -58.92 kcal Atomic # 8 Polarization: -17.83 SS G_CDS: -1.99 Total: -19.82 kcal Atomic # 14 Polarization: 44.22 SS G_CDS: 1.69 Total: 45.91 kcal Total: -65.63 1.97 -63.66 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075520697.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.763 kcal (2) G-P(sol) polarization free energy of solvation -65.632 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.869 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.967 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.665 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.902 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.09 seconds