Wall clock time and date at job start Mon Mar 30 2020 02:11:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86803 * 119.99662 * 2 1 4 4 H 1.48501 * 109.46934 * 264.77766 * 3 2 1 5 5 H 1.48505 * 109.47091 * 24.77740 * 3 2 1 6 6 H 1.48501 * 109.47055 * 144.77899 * 3 2 1 7 7 C 1.37875 * 120.00392 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99618 * 3.24712 * 7 2 1 9 9 C 1.50697 * 120.00040 * 183.24494 * 7 2 1 10 10 H 1.09003 * 110.34459 * 332.84319 * 9 7 2 11 11 C 1.51101 * 110.38977 * 95.13783 * 9 7 2 12 12 C 1.30526 * 111.10477 * 135.60419 * 11 9 7 13 13 C 1.51103 * 111.10316 * 359.61076 * 12 11 9 14 14 H 1.09003 * 110.19011 * 102.68343 * 13 12 11 15 15 O 1.42895 * 110.62316 * 224.96777 * 13 12 11 16 16 C 1.54633 * 104.78321 * 343.93533 * 13 12 11 17 17 H 0.97001 * 120.00835 * 0.02562 * 1 2 3 18 18 H 1.08001 * 124.44107 * 315.33788 * 11 9 7 19 19 H 1.07995 * 124.44491 * 179.73736 * 12 11 9 20 20 H 0.96705 * 114.00048 * 295.51664 * 15 13 12 21 21 H 1.09002 * 111.03826 * 266.40537 * 16 13 12 22 22 H 1.09000 * 111.06797 * 142.48252 * 16 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.6069 1.9828 -1.3943 5 1 1.3956 2.6821 0.5868 6 1 3.4871 1.4747 0.8075 7 6 2.0046 -1.1940 0.0005 8 1 1.4659 -2.1286 -0.0520 9 6 3.5097 -1.1949 0.0744 10 1 3.9104 -0.2731 -0.3474 11 6 3.9665 -1.3613 1.5051 12 6 4.9423 -2.2241 1.5896 13 6 5.2927 -2.7839 0.2305 14 1 6.2015 -2.3150 -0.1467 15 8 5.4564 -4.2019 0.2973 16 6 4.0871 -2.4225 -0.6679 17 1 -0.4851 0.8400 -0.0004 18 1 3.5440 -0.8323 2.3466 19 1 5.4333 -2.5027 2.5102 20 1 6.1986 -4.4867 0.8480 21 1 3.3636 -3.2372 -0.6983 22 1 4.4137 -2.1543 -1.6726 RHF calculation, no. of doubly occupied orbitals= 28 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000075520699.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:11:56 Heat of formation + Delta-G solvation = -37.576292 kcal Electronic energy + Delta-G solvation = -8155.822712 eV Core-core repulsion = 6483.049559 eV Total energy + Delta-G solvation = -1672.773153 eV No. of doubly occupied orbitals = 28 Molecular weight (most abundant/longest-lived isotopes) = 154.073 amu Computer time = 0.06 seconds Orbital eigenvalues (eV) -38.26984 -34.86696 -32.31994 -28.60850 -27.24007 -23.18316 -19.62172 -18.47798 -17.20317 -16.12305 -15.49441 -14.11677 -13.58083 -12.69314 -12.28448 -12.03392 -11.17554 -11.00433 -10.79374 -10.48598 -9.94347 -9.71043 -9.55910 -9.38903 -8.58837 -8.05184 -6.11062 -4.10523 3.06356 3.28276 3.34513 3.36822 4.38512 4.90254 5.19505 5.57072 5.60218 5.75997 6.22723 6.39175 6.53198 6.75984 7.05859 7.16667 7.30219 7.59915 7.80490 8.13724 8.49641 8.95007 9.50616 11.01916 Molecular weight = 154.07amu Principal moments of inertia in cm(-1) A = 0.090554 B = 0.018124 C = 0.016930 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 309.133620 B = 1544.515307 C = 1653.513094 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.070 3.930 3 Si 0.878 3.122 4 H -0.274 1.274 5 H -0.288 1.288 6 H -0.265 1.265 7 C -0.507 4.507 8 H 0.076 0.924 9 C 0.024 3.976 10 H 0.047 0.953 11 C -0.094 4.094 12 C -0.266 4.266 13 C 0.127 3.873 14 H 0.050 0.950 15 O -0.567 6.567 16 C -0.100 4.100 17 H 0.265 0.735 18 H 0.111 0.889 19 H 0.108 0.892 20 H 0.365 0.635 21 H 0.078 0.922 22 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.753 -1.231 1.364 9.925 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.132 4.132 3 Si 0.705 3.295 4 H -0.200 1.200 5 H -0.215 1.215 6 H -0.189 1.189 7 C -0.544 4.544 8 H 0.094 0.906 9 C 0.005 3.995 10 H 0.065 0.935 11 C -0.113 4.113 12 C -0.284 4.284 13 C 0.069 3.931 14 H 0.068 0.932 15 O -0.372 6.372 16 C -0.138 4.138 17 H 0.075 0.925 18 H 0.129 0.871 19 H 0.126 0.874 20 H 0.210 0.790 21 H 0.096 0.904 22 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 9.042 -1.086 0.949 9.156 hybrid contribution 0.820 0.963 0.586 1.394 sum 9.862 -0.123 1.535 9.981 Atomic orbital electron populations 1.69904 1.06328 1.27089 1.50219 1.25113 0.94760 0.99080 0.94276 0.86845 0.80227 0.83547 0.78904 1.20005 1.21452 1.18935 1.20993 0.88264 0.94704 1.50450 0.90617 1.19121 0.97337 0.94022 0.88982 0.93507 1.24010 0.91673 0.94935 1.00649 1.23543 1.02731 1.04412 0.97730 1.21747 0.97924 0.79622 0.93766 0.93237 1.86584 1.54616 1.23071 1.72884 1.22593 0.94873 0.99413 0.96937 0.92543 0.87080 0.87402 0.78980 0.90384 0.91979 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.42 13.96 55.43 0.77 -26.65 14 2 C 0.07 2.00 5.47 -17.82 -0.10 1.91 14 3 Si 0.88 21.29 26.95 -169.99 -4.58 16.71 14 4 H -0.27 -6.51 7.11 56.52 0.40 -6.11 14 5 H -0.29 -6.96 7.11 56.52 0.40 -6.56 14 6 H -0.26 -6.13 6.92 56.52 0.39 -5.74 14 7 C -0.51 -14.40 8.90 -34.44 -0.31 -14.70 14 8 H 0.08 2.36 7.93 -52.48 -0.42 1.94 14 9 C 0.02 0.58 2.40 -91.87 -0.22 0.36 14 10 H 0.05 1.11 5.57 -51.93 -0.29 0.82 14 11 C -0.09 -2.07 10.07 -35.70 -0.36 -2.43 14 12 C -0.27 -5.11 10.46 -35.70 -0.37 -5.48 14 13 C 0.13 2.39 4.24 -26.83 -0.11 2.27 14 14 H 0.05 0.83 8.14 -51.93 -0.42 0.41 14 15 O -0.57 -9.98 13.38 -35.23 -0.47 -10.45 14 16 C -0.10 -2.17 6.43 -25.01 -0.16 -2.33 14 17 H 0.26 7.55 8.31 -40.82 -0.34 7.21 14 18 H 0.11 2.40 8.06 -52.49 -0.42 1.98 14 19 H 0.11 1.78 8.06 -52.49 -0.42 1.36 14 20 H 0.36 4.49 9.12 45.56 0.42 4.90 14 21 H 0.08 1.81 7.79 -51.93 -0.40 1.41 14 22 H 0.06 1.21 8.14 -51.93 -0.42 0.79 14 LS Contribution 194.51 15.07 2.93 2.93 Total: -1.00 -30.95 194.51 -4.51 -35.46 By element: Atomic # 1 Polarization: 3.94 SS G_CDS: -1.53 Total: 2.41 kcal Atomic # 6 Polarization: -18.78 SS G_CDS: -1.63 Total: -20.41 kcal Atomic # 7 Polarization: -27.42 SS G_CDS: 0.77 Total: -26.65 kcal Atomic # 8 Polarization: -9.98 SS G_CDS: -0.47 Total: -10.45 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -4.58 Total: 16.71 kcal Total LS contribution 2.93 Total: 2.93 kcal Total: -30.95 -4.51 -35.46 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075520699.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.112 kcal (2) G-P(sol) polarization free energy of solvation -30.954 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.065 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.511 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.465 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.576 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.06 seconds