Wall clock time and date at job start Mon Mar 30 2020 02:16:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86801 * 120.00064 * 2 1 4 4 H 1.48490 * 109.47084 * 269.99992 * 3 2 1 5 5 H 1.48508 * 109.46794 * 29.99790 * 3 2 1 6 6 H 1.48497 * 109.47060 * 149.99522 * 3 2 1 7 7 C 1.37875 * 119.99907 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00461 * 0.02562 * 7 2 1 9 9 C 1.50705 * 119.99855 * 180.02562 * 7 2 1 10 10 N 1.46500 * 109.46829 * 180.02562 * 9 7 2 11 11 C 1.36280 * 125.83582 * 89.98042 * 10 9 7 12 12 N 1.28246 * 114.58976 * 179.97438 * 11 10 9 13 13 C 1.46973 * 110.18903 * 0.02562 * 12 11 10 14 14 C 1.47627 * 125.79763 * 269.87710 * 10 9 7 15 15 H 0.96994 * 120.00107 * 0.02562 * 1 2 3 16 16 H 1.08994 * 109.46807 * 60.00218 * 9 7 2 17 17 H 1.09002 * 109.47268 * 300.00359 * 9 7 2 18 18 H 1.07997 * 122.70663 * 0.02562 * 11 10 9 19 19 H 1.09002 * 110.55654 * 118.58627 * 13 12 11 20 20 H 1.09001 * 110.55190 * 241.26537 * 13 12 11 21 21 H 1.09003 * 110.74601 * 61.65114 * 14 10 9 22 22 H 1.08999 * 110.81169 * 298.32043 * 14 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4402 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 1.4646 -2.1294 0.0005 9 6 3.5116 -1.1940 0.0011 10 7 3.9999 -2.5753 0.0010 11 6 4.2658 -3.3274 -1.1039 12 7 4.6856 -4.5132 -0.8539 13 6 4.7615 -4.7288 0.5980 14 6 4.2896 -3.3888 1.1983 15 1 -0.4850 0.8400 -0.0004 16 1 3.8745 -0.6801 0.8911 17 1 3.8753 -0.6803 -0.8888 18 1 4.1346 -2.9547 -2.1090 19 1 4.0974 -5.5388 0.8998 20 1 5.7866 -4.9432 0.8999 21 1 3.3892 -3.5303 1.7961 22 1 5.0811 -2.9335 1.7936 RHF calculation, no. of doubly occupied orbitals= 28 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000075520735.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:16:07 Heat of formation + Delta-G solvation = 33.540170 kcal Electronic energy + Delta-G solvation = -8080.756947 eV Core-core repulsion = 6443.360387 eV Total energy + Delta-G solvation = -1637.396560 eV No. of doubly occupied orbitals = 28 Molecular weight (most abundant/longest-lived isotopes) = 154.080 amu Computer time = 0.06 seconds Orbital eigenvalues (eV) -39.09592 -33.51525 -31.66070 -29.26095 -27.39986 -22.72155 -21.25532 -19.59772 -17.03307 -15.77483 -15.11630 -14.14352 -13.74743 -12.78083 -12.46689 -11.92325 -11.70186 -11.52289 -11.17883 -10.72415 -10.64326 -9.96325 -9.53247 -9.15873 -8.72215 -6.97385 -6.20757 -4.22286 3.18128 3.26046 3.26551 3.31574 4.09803 4.27074 5.09193 5.16649 5.40247 5.61317 5.95536 6.02321 6.40336 6.44141 6.64208 6.70857 7.36925 7.46455 8.18553 8.52639 8.71009 8.86341 9.38614 10.92299 Molecular weight = 154.08amu Principal moments of inertia in cm(-1) A = 0.098609 B = 0.015642 C = 0.015030 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 283.882519 B = 1789.597688 C = 1862.520577 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.073 3.927 3 Si 0.877 3.123 4 H -0.273 1.273 5 H -0.283 1.283 6 H -0.265 1.265 7 C -0.543 4.543 8 H 0.076 0.924 9 C 0.236 3.764 10 N -0.621 5.621 11 C 0.362 3.638 12 N -0.621 5.621 13 C 0.027 3.973 14 C 0.078 3.922 15 H 0.266 0.734 16 H 0.030 0.970 17 H 0.029 0.971 18 H 0.177 0.823 19 H 0.071 0.929 20 H 0.069 0.931 21 H 0.069 0.931 22 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.603 -1.404 1.066 7.805 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.130 4.130 3 Si 0.704 3.296 4 H -0.198 1.198 5 H -0.209 1.209 6 H -0.190 1.190 7 C -0.582 4.582 8 H 0.095 0.905 9 C 0.114 3.886 10 N -0.341 5.341 11 C 0.065 3.935 12 N -0.353 5.353 13 C -0.103 4.103 14 C -0.047 4.047 15 H 0.076 0.924 16 H 0.048 0.952 17 H 0.047 0.953 18 H 0.193 0.807 19 H 0.089 0.911 20 H 0.088 0.912 21 H 0.087 0.913 22 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 7.686 -1.973 0.755 7.971 hybrid contribution -0.072 1.585 0.654 1.717 sum 7.615 -0.388 1.410 7.754 Atomic orbital electron populations 1.69901 1.06280 1.27207 1.49733 1.24917 0.94792 0.99044 0.94287 0.86841 0.80269 0.83680 0.78850 1.19843 1.20897 1.19003 1.21505 0.89514 0.94998 1.52199 0.90547 1.19479 0.95234 0.76705 0.97159 1.48452 1.67016 1.14827 1.03798 1.24514 0.87551 0.87823 0.93618 1.74197 1.32008 1.16491 1.12588 1.22947 1.00362 0.96131 0.90870 1.22573 1.00087 0.92219 0.89824 0.92371 0.95186 0.95282 0.80653 0.91078 0.91228 0.91305 0.92118 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.66 13.96 55.43 0.77 -25.88 14 2 C 0.07 2.03 5.47 -17.82 -0.10 1.93 14 3 Si 0.88 20.24 27.47 -169.99 -4.67 15.57 14 4 H -0.27 -6.16 7.11 56.52 0.40 -5.76 14 5 H -0.28 -6.54 7.11 56.52 0.40 -6.14 14 6 H -0.27 -5.81 6.54 56.52 0.37 -5.44 14 7 C -0.54 -14.96 9.94 -34.44 -0.34 -15.31 14 8 H 0.08 2.36 8.06 -52.49 -0.42 1.94 14 9 C 0.24 5.41 5.03 -5.19 -0.03 5.39 14 10 N -0.62 -13.02 3.03 -176.24 -0.53 -13.56 14 11 C 0.36 7.09 12.18 -91.07 -1.11 5.98 14 12 N -0.62 -12.27 11.60 -61.75 -0.72 -12.99 14 13 C 0.03 0.47 8.05 -3.14 -0.03 0.44 14 14 C 0.08 1.43 7.80 -2.78 -0.02 1.40 14 15 H 0.27 7.40 8.31 -40.82 -0.34 7.06 14 16 H 0.03 0.68 7.20 -51.93 -0.37 0.31 14 17 H 0.03 0.64 7.57 -51.93 -0.39 0.24 14 18 H 0.18 2.98 8.06 -52.49 -0.42 2.56 14 19 H 0.07 1.17 8.14 -51.93 -0.42 0.75 14 20 H 0.07 1.07 8.14 -51.93 -0.42 0.65 14 21 H 0.07 1.30 8.14 -51.93 -0.42 0.87 14 22 H 0.06 1.00 8.14 -51.93 -0.42 0.57 14 LS Contribution 197.04 15.07 2.97 2.97 Total: -1.00 -30.17 197.04 -6.27 -36.43 By element: Atomic # 1 Polarization: 0.09 SS G_CDS: -2.47 Total: -2.38 kcal Atomic # 6 Polarization: 1.46 SS G_CDS: -1.62 Total: -0.16 kcal Atomic # 7 Polarization: -51.95 SS G_CDS: -0.48 Total: -52.43 kcal Atomic # 14 Polarization: 20.24 SS G_CDS: -4.67 Total: 15.57 kcal Total LS contribution 2.97 Total: 2.97 kcal Total: -30.17 -6.27 -36.43 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075520735.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.974 kcal (2) G-P(sol) polarization free energy of solvation -30.165 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.809 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.269 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.434 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.540 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.06 seconds