Wall clock time and date at job start Mon Mar 30 2020 01:45:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.35074 * 127.22676 * 2 1 4 4 N 1.35892 * 107.37575 * 179.88499 * 3 2 1 5 5 H 0.97004 * 124.85740 * 180.15450 * 4 3 2 6 6 N 1.28474 * 110.27970 * 0.39974 * 4 3 2 7 7 C 1.32744 * 109.93315 * 359.75503 * 6 4 3 8 8 C 1.41433 * 126.57103 * 180.02562 * 7 6 4 9 9 H 1.07998 * 120.00333 * 179.97438 * 8 7 6 10 10 C 1.39851 * 119.99624 * 359.95865 * 8 7 6 11 11 N 1.30893 * 120.00500 * 0.02562 * 10 8 7 12 12 Si 1.86800 * 119.99784 * 179.97438 * 10 8 7 13 13 H 1.48495 * 109.47222 * 0.02562 * 12 10 8 14 14 H 1.48500 * 109.47237 * 120.00179 * 12 10 8 15 15 H 1.48501 * 109.47083 * 240.00019 * 12 10 8 16 16 H 1.09002 * 109.47152 * 269.68030 * 1 2 3 17 17 H 1.09001 * 109.46980 * 149.68131 * 1 2 3 18 18 H 1.09004 * 109.47113 * 29.68111 * 1 2 3 19 19 H 1.08004 * 126.30823 * 359.97438 * 3 2 1 20 20 H 0.96999 * 120.00508 * 180.02562 * 11 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3242 1.0755 0.0000 4 7 3.6024 0.6141 0.0026 5 1 4.3941 1.1745 0.0053 6 7 3.6120 -0.6706 -0.0042 7 6 2.3675 -1.1325 -0.0063 8 6 1.9727 -2.4906 -0.0129 9 1 0.9239 -2.7481 -0.0136 10 6 2.9406 -3.5001 -0.0189 11 7 4.2118 -3.1880 -0.0178 12 14 2.4193 -5.2938 -0.0268 13 1 0.9367 -5.3784 -0.0261 14 1 2.9519 -5.9587 -1.2431 15 1 2.9547 -5.9703 1.1818 16 1 -0.3633 -0.0057 1.0277 17 1 -0.3633 -0.8871 -0.5188 18 1 -0.3633 0.8929 -0.5089 19 1 2.0181 2.1113 -0.0004 20 1 4.8831 -3.8882 -0.0223 RHF calculation, no. of doubly occupied orbitals= 27 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000078445136.mol2 20 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:45:56 Heat of formation + Delta-G solvation = 59.534599 kcal Electronic energy + Delta-G solvation = -7797.636854 eV Core-core repulsion = 6188.678975 eV Total energy + Delta-G solvation = -1608.957879 eV No. of doubly occupied orbitals = 27 Molecular weight (most abundant/longest-lived isotopes) = 152.064 amu Computer time = 0.09 seconds Orbital eigenvalues (eV) -40.21367 -33.23868 -31.48407 -29.09249 -25.82142 -25.22506 -20.17203 -18.50224 -16.56305 -16.11048 -14.52239 -13.53176 -12.92959 -12.46621 -11.82566 -11.68661 -11.22444 -11.06049 -10.58207 -10.28997 -9.68616 -9.15547 -8.28086 -7.39267 -7.19232 -6.18281 -4.03544 3.20560 3.30205 3.35317 3.64797 4.27701 4.49321 4.76727 5.78629 6.10393 6.34089 6.57334 6.69575 6.89935 7.26958 7.53976 7.61653 7.95527 8.53044 8.95334 9.12536 9.40635 10.39859 10.80501 Molecular weight = 152.06amu Principal moments of inertia in cm(-1) A = 0.082580 B = 0.021291 C = 0.017083 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 338.983315 B = 1314.792088 C = 1638.630683 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.049 4.049 2 C -0.266 4.266 3 C -0.050 4.050 4 N -0.444 5.444 5 H 0.417 0.583 6 N -0.332 5.332 7 C 0.193 3.807 8 C -0.448 4.448 9 H 0.078 0.922 10 C 0.070 3.930 11 N -0.785 5.785 12 Si 0.902 3.098 13 H -0.265 1.265 14 H -0.279 1.279 15 H -0.279 1.279 16 H 0.041 0.959 17 H 0.054 0.946 18 H 0.037 0.963 19 H 0.140 0.860 20 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.039 3.209 -0.012 4.419 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.279 4.279 3 C -0.196 4.196 4 N -0.150 5.150 5 H 0.255 0.745 6 N -0.165 5.165 7 C 0.043 3.957 8 C -0.487 4.487 9 H 0.096 0.904 10 C -0.147 4.147 11 N -0.415 5.415 12 Si 0.728 3.272 13 H -0.189 1.189 14 H -0.205 1.205 15 H -0.205 1.205 16 H 0.060 0.940 17 H 0.073 0.927 18 H 0.056 0.944 19 H 0.158 0.842 20 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -1.698 2.820 -0.012 3.292 hybrid contribution -0.584 -0.195 0.004 0.616 sum -2.282 2.625 -0.008 3.478 Atomic orbital electron populations 1.19713 0.91506 0.99999 0.99540 1.20324 0.95337 0.93563 1.18723 1.22184 0.86662 0.97969 1.12765 1.43497 1.05476 1.06483 1.59553 0.74469 1.74671 1.22471 0.88558 1.30759 1.19273 0.86642 0.93347 0.96486 1.18537 0.93561 0.87815 1.48792 0.90418 1.25749 0.94675 1.00273 0.93970 1.69989 1.00336 1.33337 1.37811 0.86371 0.79588 0.83326 0.77916 1.18869 1.20507 1.20500 0.93983 0.92664 0.94374 0.84249 0.92419 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.05 -1.01 10.27 36.01 0.37 -0.64 14 2 C -0.27 -6.64 6.26 -104.21 -0.65 -7.29 14 3 C -0.05 -1.11 11.97 -16.88 -0.20 -1.31 14 4 N -0.44 -10.49 6.86 30.58 0.21 -10.28 14 5 H 0.42 7.96 8.96 -190.43 -1.71 6.25 14 6 N -0.33 -9.61 10.50 32.34 0.34 -9.27 14 7 C 0.19 5.63 6.78 -84.72 -0.57 5.06 14 8 C -0.45 -13.09 9.22 -37.76 -0.35 -13.44 14 9 H 0.08 2.14 7.54 -52.49 -0.40 1.75 14 10 C 0.07 1.99 5.49 -17.35 -0.10 1.89 14 11 N -0.79 -23.23 11.97 55.54 0.67 -22.56 14 12 Si 0.90 20.64 29.56 -169.99 -5.02 15.62 14 13 H -0.26 -5.88 7.11 56.52 0.40 -5.48 14 14 H -0.28 -6.29 7.11 56.52 0.40 -5.89 14 15 H -0.28 -6.29 7.11 56.52 0.40 -5.89 14 16 H 0.04 0.80 8.14 -51.93 -0.42 0.38 14 17 H 0.05 1.13 7.80 -51.93 -0.40 0.73 14 18 H 0.04 0.66 8.14 -51.93 -0.42 0.24 14 19 H 0.14 2.45 8.06 -52.48 -0.42 2.03 14 20 H 0.27 7.20 8.30 -40.82 -0.34 6.86 14 LS Contribution 187.14 15.07 2.82 2.82 Total: -1.00 -33.03 187.14 -5.40 -38.43 By element: Atomic # 1 Polarization: 3.89 SS G_CDS: -2.91 Total: 0.98 kcal Atomic # 6 Polarization: -14.23 SS G_CDS: -1.50 Total: -15.73 kcal Atomic # 7 Polarization: -43.33 SS G_CDS: 1.21 Total: -42.11 kcal Atomic # 14 Polarization: 20.64 SS G_CDS: -5.02 Total: 15.62 kcal Total LS contribution 2.82 Total: 2.82 kcal Total: -33.03 -5.40 -38.43 kcal The number of atoms in the molecule is 20 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000078445136.mol2 20 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.965 kcal (2) G-P(sol) polarization free energy of solvation -33.027 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.937 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.403 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.430 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.535 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.09 seconds