Wall clock time and date at job start Mon Mar 30 2020 02:05:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31299 * 1 3 3 Si 1.86800 * 119.99846 * 2 1 4 4 H 1.48502 * 109.46919 * 179.97438 * 3 2 1 5 5 H 1.48496 * 109.47224 * 299.99788 * 3 2 1 6 6 H 1.48498 * 109.47013 * 59.99737 * 3 2 1 7 7 C 1.38982 * 120.00250 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00401 * 180.02562 * 7 2 1 9 9 N 1.37343 * 119.99724 * 0.02562 * 7 2 1 10 10 C 1.36565 * 126.09359 * 179.97438 * 9 7 2 11 11 C 1.35501 * 107.52717 * 180.02562 * 10 9 7 12 12 O 1.36181 * 126.05127 * 180.02562 * 11 10 9 13 13 C 1.40503 * 107.89260 * 359.97438 * 11 10 9 14 14 N 1.30950 * 108.41658 * 0.02562 * 13 11 10 15 15 H 0.96999 * 120.00454 * 0.02562 * 1 2 3 16 16 H 1.08002 * 126.23480 * 359.75874 * 10 9 7 17 17 H 0.96697 * 113.99715 * 89.99956 * 12 11 10 18 18 H 1.08007 * 125.79035 * 180.02562 * 13 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3130 0.0000 0.0000 3 14 2.2469 1.6178 0.0000 4 1 3.7070 1.3464 0.0006 5 1 1.8882 2.3964 -1.2125 6 1 1.8881 2.3964 1.2125 7 6 2.0080 -1.2036 0.0005 8 1 3.0879 -1.2036 0.0010 9 7 1.3212 -2.3930 0.0005 10 6 1.8746 -3.6415 0.0005 11 6 0.8588 -4.5382 0.0000 12 8 0.9865 -5.8940 0.0003 13 6 -0.3497 -3.8214 0.0002 14 7 -0.0717 -2.5417 0.0003 15 1 -0.4851 0.8400 -0.0004 16 1 2.9297 -3.8721 -0.0031 17 1 1.0228 -6.2854 0.8837 18 1 -1.3399 -4.2527 0.0003 RHF calculation, no. of doubly occupied orbitals= 27 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000082411634.mol2 18 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:05:21 Heat of formation + Delta-G solvation = 9.734814 kcal Electronic energy + Delta-G solvation = -7936.546282 eV Core-core repulsion = 6162.284350 eV Total energy + Delta-G solvation = -1774.261932 eV No. of doubly occupied orbitals = 27 Molecular weight (most abundant/longest-lived isotopes) = 154.048 amu Computer time = 0.07 seconds Orbital eigenvalues (eV) -41.45869 -37.63430 -35.28888 -32.32693 -29.55298 -26.82323 -22.59266 -21.71253 -19.78605 -17.92886 -17.42640 -16.11786 -15.46470 -15.03276 -14.56680 -14.28446 -13.53119 -12.88884 -12.84527 -12.04557 -11.83944 -11.32638 -10.60603 -10.20473 -9.08722 -8.51707 -6.33427 1.23842 1.40062 1.59444 1.69910 2.07942 2.13497 2.72337 3.03078 3.84856 4.41321 4.67166 4.90984 5.18179 5.42113 5.84381 6.08988 6.62546 7.20537 7.38111 7.56207 8.47991 Molecular weight = 154.05amu Principal moments of inertia in cm(-1) A = 0.143455 B = 0.017031 C = 0.015326 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 195.136965 B = 1643.710947 C = 1826.473951 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.823 5.823 2 C -0.005 4.005 3 Si 1.022 2.978 4 H -0.243 1.243 5 H -0.270 1.270 6 H -0.269 1.269 7 C -0.358 4.358 8 H 0.139 0.861 9 N -0.168 5.168 10 C -0.086 4.086 11 C -0.094 4.094 12 O -0.481 6.481 13 C -0.076 4.076 14 N -0.303 5.303 15 H 0.279 0.721 16 H 0.178 0.822 17 H 0.381 0.619 18 H 0.178 0.822 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.204 -0.580 1.648 4.553 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.450 5.450 2 C -0.217 4.217 3 Si 0.841 3.159 4 H -0.166 1.166 5 H -0.195 1.195 6 H -0.194 1.194 7 C -0.489 4.489 8 H 0.156 0.844 9 N 0.062 4.938 10 C -0.236 4.236 11 C -0.152 4.152 12 O -0.287 6.287 13 C -0.251 4.251 14 N -0.135 5.135 15 H 0.089 0.911 16 H 0.195 0.805 17 H 0.234 0.766 18 H 0.195 0.805 Dipole moment (debyes) X Y Z Total from point charges 3.529 0.778 1.025 3.757 hybrid contribution 0.315 -0.479 0.508 0.767 sum 3.845 0.299 1.533 4.150 Atomic orbital electron populations 1.70366 1.08353 1.29333 1.36977 1.26910 0.96591 1.04306 0.93887 0.84492 0.78892 0.74108 0.78435 1.16628 1.19541 1.19389 1.20704 0.93013 0.80900 1.54269 0.84401 1.44902 1.03831 1.04789 1.40266 1.22581 0.99720 0.85298 1.15962 1.17924 0.91121 0.83708 1.22493 1.84827 1.95497 1.14896 1.33433 1.24355 0.99579 0.92045 1.09082 1.78127 0.91918 1.16370 1.27106 0.91102 0.80481 0.76615 0.80476 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -46.70 11.82 21.66 0.26 -46.44 13 2 C -0.01 -0.27 5.50 84.95 0.47 0.20 13 3 Si 1.02 38.23 29.55 68.60 2.03 40.26 13 4 H -0.24 -8.26 7.11 99.48 0.71 -7.55 13 5 H -0.27 -9.89 7.11 99.48 0.71 -9.19 13 6 H -0.27 -9.77 7.11 99.48 0.71 -9.06 13 7 C -0.36 -19.26 10.25 84.01 0.86 -18.40 13 8 H 0.14 6.53 7.83 -2.91 -0.02 6.51 13 9 N -0.17 -9.54 3.74 -190.08 -0.71 -10.25 13 10 C -0.09 -4.29 11.49 83.32 0.96 -3.33 13 11 C -0.09 -4.54 7.26 22.19 0.16 -4.38 13 12 O -0.48 -19.24 13.67 -95.61 -1.31 -20.55 13 13 C -0.08 -3.89 12.04 85.38 1.03 -2.87 13 14 N -0.30 -17.91 10.41 -56.54 -0.59 -18.50 13 15 H 0.28 14.40 8.31 -92.71 -0.77 13.63 13 16 H 0.18 7.44 8.06 -2.91 -0.02 7.41 13 17 H 0.38 11.02 9.07 -74.06 -0.67 10.35 13 18 H 0.18 7.89 8.06 -2.91 -0.02 7.86 13 Total: -1.00 -68.06 178.36 3.76 -64.30 By element: Atomic # 1 Polarization: 19.35 SS G_CDS: 0.61 Total: 19.95 kcal Atomic # 6 Polarization: -32.25 SS G_CDS: 3.47 Total: -28.77 kcal Atomic # 7 Polarization: -74.15 SS G_CDS: -1.04 Total: -75.19 kcal Atomic # 8 Polarization: -19.24 SS G_CDS: -1.31 Total: -20.55 kcal Atomic # 14 Polarization: 38.23 SS G_CDS: 2.03 Total: 40.26 kcal Total: -68.06 3.76 -64.30 kcal The number of atoms in the molecule is 18 The average number of expansion shells was 13.00 The maximum number of expansion shells was 13 The minimum number of expansion shells was 13 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082411634.mol2 18 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.031 kcal (2) G-P(sol) polarization free energy of solvation -68.058 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.974 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.761 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.297 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.735 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.07 seconds