Wall clock time and date at job start Mon Mar 30 2020 01:54:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.35938 * 126.01006 * 2 1 4 4 O 1.34599 * 107.35865 * 180.20757 * 3 2 1 5 5 C 1.34951 * 107.60630 * 359.63425 * 4 3 2 6 6 C 1.39796 * 125.79866 * 180.14484 * 5 4 3 7 7 H 1.08004 * 119.99969 * 180.26637 * 6 5 4 8 8 C 1.40344 * 120.00122 * 0.26110 * 6 5 4 9 9 N 1.30625 * 119.99685 * 0.02562 * 8 6 5 10 10 Si 1.86801 * 119.99988 * 180.02562 * 8 6 5 11 11 H 1.48503 * 109.47007 * 60.00402 * 10 8 6 12 12 H 1.48502 * 109.46737 * 180.02562 * 10 8 6 13 13 H 1.48499 * 109.47349 * 300.00183 * 10 8 6 14 14 N 1.32820 * 108.40292 * 0.36857 * 5 4 3 15 15 H 1.09002 * 109.47419 * 90.00106 * 1 2 3 16 16 H 1.08999 * 109.47693 * 210.00461 * 1 2 3 17 17 H 1.09000 * 109.47363 * 330.00410 * 1 2 3 18 18 H 1.08002 * 126.31819 * 359.93558 * 3 2 1 19 19 H 0.97003 * 119.99745 * 179.97438 * 9 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3062 1.0996 0.0000 4 8 3.5815 0.6692 -0.0047 5 6 3.5569 -0.6801 0.0008 6 6 4.6757 -1.5184 0.0013 7 1 4.5470 -2.5907 0.0016 8 6 5.9660 -0.9665 0.0015 9 7 6.1216 0.3305 0.0017 10 14 7.4609 -2.0866 0.0016 11 1 7.4375 -2.9435 -1.2111 12 1 8.6966 -1.2629 0.0024 13 1 7.4372 -2.9438 1.2140 14 7 2.2892 -1.0764 0.0005 15 1 -0.3634 0.0000 -1.0277 16 1 -0.3634 -0.8899 0.5139 17 1 -0.3634 0.8900 0.5138 18 1 1.9783 2.1287 -0.0010 19 1 7.0135 0.7119 0.0022 RHF calculation, no. of doubly occupied orbitals= 27 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000082411654.mol2 19 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:54:14 Heat of formation + Delta-G solvation = -27.970263 kcal Electronic energy + Delta-G solvation = -7858.011317 eV Core-core repulsion = 6147.540281 eV Total energy + Delta-G solvation = -1710.471036 eV No. of doubly occupied orbitals = 27 Molecular weight (most abundant/longest-lived isotopes) = 153.053 amu Computer time = 0.07 seconds Orbital eigenvalues (eV) -42.96857 -35.79517 -35.13332 -32.09466 -29.18484 -26.70295 -22.74909 -21.51070 -19.27189 -17.36893 -16.60996 -16.52075 -15.21061 -14.79705 -13.90721 -13.77097 -13.11349 -12.99872 -12.97758 -12.48373 -11.98945 -11.50793 -11.13172 -10.66308 -9.40123 -8.85030 -6.76921 1.11141 1.39212 1.56412 1.58668 2.17529 2.20863 2.99941 3.18924 4.09325 4.43724 4.75623 4.87290 5.01371 5.06443 5.16626 5.78283 5.98385 6.12256 6.51617 6.61116 7.79792 8.20059 Molecular weight = 153.05amu Principal moments of inertia in cm(-1) A = 0.143591 B = 0.017068 C = 0.015382 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 194.950861 B = 1640.115603 C = 1819.921581 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 C -0.010 4.010 3 C -0.239 4.239 4 O -0.215 6.215 5 C 0.308 3.692 6 C -0.464 4.464 7 H 0.112 0.888 8 C 0.025 3.975 9 N -0.812 5.812 10 Si 1.019 2.981 11 H -0.252 1.252 12 H -0.260 1.260 13 H -0.252 1.252 14 N -0.647 5.647 15 H 0.076 0.924 16 H 0.064 0.936 17 H 0.090 0.910 18 H 0.211 0.789 19 H 0.299 0.701 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.105 -0.061 0.003 0.121 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.134 4.134 3 C -0.311 4.311 4 O -0.107 6.107 5 C 0.124 3.876 6 C -0.499 4.499 7 H 0.130 0.870 8 C -0.194 4.194 9 N -0.439 5.439 10 Si 0.836 3.164 11 H -0.176 1.176 12 H -0.183 1.183 13 H -0.176 1.176 14 N -0.383 5.383 15 H 0.095 0.905 16 H 0.083 0.917 17 H 0.109 0.891 18 H 0.228 0.772 19 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -0.157 -0.479 0.001 0.504 hybrid contribution 0.600 0.668 -0.012 0.898 sum 0.443 0.189 -0.011 0.482 Atomic orbital electron populations 1.20040 0.85184 1.03115 1.02749 1.22399 0.98963 0.89195 1.02824 1.24923 0.81853 1.00679 1.23651 1.84776 1.28677 1.23794 1.73498 1.22741 0.93317 0.78742 0.92768 1.18821 0.87792 0.94311 1.48987 0.86989 1.27303 1.04087 0.97520 0.90445 1.69770 1.27550 1.14026 1.32586 0.84720 0.73506 0.77514 0.80692 1.17615 1.18345 1.17618 1.70809 1.00676 1.31079 1.35711 0.90496 0.91748 0.89127 0.77226 0.89041 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.05 -1.93 10.43 71.24 0.74 -1.19 13 2 C -0.01 -0.50 7.10 41.84 0.30 -0.20 13 3 C -0.24 -12.30 12.13 67.29 0.82 -11.49 13 4 O -0.21 -13.09 9.06 -11.87 -0.11 -13.20 13 5 C 0.31 19.11 7.66 84.92 0.65 19.76 13 6 C -0.46 -26.85 9.45 23.16 0.22 -26.63 13 7 H 0.11 6.14 7.85 -2.91 -0.02 6.11 13 8 C 0.03 1.31 5.50 85.38 0.47 1.78 13 9 N -0.81 -44.16 11.98 21.90 0.26 -43.90 13 10 Si 1.02 37.59 29.56 68.60 2.03 39.62 13 11 H -0.25 -8.91 7.11 99.48 0.71 -8.20 13 12 H -0.26 -8.81 7.11 99.48 0.71 -8.10 13 13 H -0.25 -8.91 7.11 99.48 0.71 -8.20 13 14 N -0.65 -38.36 11.35 -297.40 -3.37 -41.73 13 15 H 0.08 2.47 8.14 -2.39 -0.02 2.45 13 16 H 0.06 2.25 8.14 -2.39 -0.02 2.23 13 17 H 0.09 2.63 8.14 -2.39 -0.02 2.61 13 18 H 0.21 8.62 8.06 -2.91 -0.02 8.60 13 19 H 0.30 14.28 8.29 -92.71 -0.77 13.51 13 Total: -1.00 -69.42 184.17 3.25 -66.16 By element: Atomic # 1 Polarization: 9.77 SS G_CDS: 1.25 Total: 11.01 kcal Atomic # 6 Polarization: -21.16 SS G_CDS: 3.20 Total: -17.97 kcal Atomic # 7 Polarization: -82.52 SS G_CDS: -3.11 Total: -85.63 kcal Atomic # 8 Polarization: -13.09 SS G_CDS: -0.11 Total: -13.20 kcal Atomic # 14 Polarization: 37.59 SS G_CDS: 2.03 Total: 39.62 kcal Total: -69.42 3.25 -66.16 kcal The number of atoms in the molecule is 19 The average number of expansion shells was 13.00 The maximum number of expansion shells was 13 The minimum number of expansion shells was 13 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082411654.mol2 19 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.194 kcal (2) G-P(sol) polarization free energy of solvation -69.416 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.221 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.251 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.165 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.970 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.08 seconds