Wall clock time and date at job start Mon Mar 30 2020 02:21:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53001 * 109.46936 * 2 1 4 4 H 1.09004 * 109.47035 * 305.64961 * 3 2 1 5 5 C 1.50702 * 109.46996 * 65.65002 * 3 2 1 6 6 H 1.07997 * 119.99679 * 359.97438 * 5 3 2 7 7 C 1.37878 * 119.99855 * 179.97438 * 5 3 2 8 8 N 1.31509 * 120.00213 * 0.02562 * 7 5 3 9 9 Si 1.86798 * 119.99653 * 180.02562 * 7 5 3 10 10 H 1.48505 * 109.47120 * 90.00487 * 9 7 5 11 11 H 1.48500 * 109.46815 * 209.99856 * 9 7 5 12 12 H 1.48498 * 109.47396 * 329.99688 * 9 7 5 13 13 C 1.52995 * 109.46907 * 185.64954 * 3 2 1 14 14 C 1.53002 * 117.49797 * 128.29638 * 13 3 2 15 15 C 1.53006 * 117.50050 * 59.63635 * 13 3 2 16 16 H 1.09001 * 109.47190 * 54.24093 * 1 2 3 17 17 H 1.08998 * 109.47185 * 294.24194 * 1 2 3 18 18 H 1.09004 * 109.47057 * 174.23933 * 1 2 3 19 19 H 1.08995 * 109.47165 * 120.00477 * 2 1 3 20 20 H 1.09004 * 109.46733 * 240.00146 * 2 1 3 21 21 H 0.96995 * 120.00384 * 179.97438 * 8 7 5 22 22 H 1.09001 * 115.55059 * 273.96692 * 13 3 2 23 23 H 1.09000 * 117.50062 * 359.97438 * 14 13 3 24 24 H 1.09001 * 117.49593 * 145.02130 * 14 13 3 25 25 H 1.08999 * 117.50009 * 214.97752 * 15 13 3 26 26 H 1.08992 * 117.49553 * 0.02562 * 15 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5964 1.9847 -0.8351 5 6 1.6551 2.1114 1.2944 6 1 1.1017 1.5626 2.0421 7 6 2.0094 3.4239 1.5242 8 7 2.6828 4.0923 0.6136 9 14 1.5329 4.2527 3.1290 10 1 2.6093 4.0467 4.1312 11 1 1.3437 5.7073 2.8977 12 1 0.2670 3.6630 3.6339 13 6 3.5633 1.4449 -0.1420 14 6 4.1691 2.3215 -1.2399 15 6 4.1571 0.7987 -1.3954 16 1 -0.3633 0.6005 -0.8339 17 1 -0.3633 0.4219 0.9370 18 1 -0.3633 -1.0225 -0.1032 19 1 1.8934 -0.5139 0.8899 20 1 1.8933 -0.5138 -0.8900 21 1 2.9318 5.0157 0.7750 22 1 4.1224 1.3454 0.7884 23 1 3.4824 2.8962 -1.8613 24 1 5.1270 2.7984 -1.0319 25 1 5.1069 0.2745 -1.2897 26 1 3.4623 0.3724 -2.1190 RHF calculation, no. of doubly occupied orbitals= 29 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000084327131.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:21:26 Heat of formation + Delta-G solvation = -13.214910 kcal Electronic energy + Delta-G solvation = -8499.690089 eV Core-core repulsion = 6963.806420 eV Total energy + Delta-G solvation = -1535.883669 eV No. of doubly occupied orbitals = 29 Molecular weight (most abundant/longest-lived isotopes) = 154.105 amu Computer time = 0.10 seconds Orbital eigenvalues (eV) -38.68770 -34.95571 -33.68219 -28.84114 -25.67102 -23.11943 -22.19065 -20.60066 -18.55052 -16.51555 -15.96527 -15.21443 -14.88331 -14.30742 -13.55793 -13.04138 -12.84012 -12.75608 -12.22206 -12.21145 -12.04006 -11.52251 -11.33181 -11.16767 -10.53402 -10.35593 -10.07569 -7.99592 -6.11063 1.41751 1.43383 1.52263 2.47862 3.26132 3.41049 4.24074 4.44499 4.52566 4.55191 4.75205 4.78743 4.93324 5.09365 5.20321 5.29041 5.42839 5.52328 5.55677 5.62990 5.71230 5.92243 6.07592 6.48183 7.00019 7.54886 9.05232 Molecular weight = 154.11amu Principal moments of inertia in cm(-1) A = 0.049019 B = 0.023839 C = 0.017282 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 571.064307 B = 1174.247105 C = 1619.752043 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.106 4.106 3 C 0.069 3.931 4 H -0.006 1.006 5 C -0.528 4.528 6 H 0.051 0.949 7 C 0.016 3.984 8 N -0.901 5.901 9 Si 0.944 3.056 10 H -0.279 1.279 11 H -0.287 1.287 12 H -0.270 1.270 13 C -0.107 4.107 14 C -0.149 4.149 15 C -0.190 4.190 16 H 0.039 0.961 17 H 0.041 0.959 18 H 0.063 0.937 19 H 0.046 0.954 20 H 0.054 0.946 21 H 0.255 0.745 22 H 0.060 0.940 23 H 0.065 0.935 24 H 0.070 0.930 25 H 0.097 0.903 26 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.075 -4.912 -1.214 5.060 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.144 4.144 3 C 0.051 3.949 4 H 0.012 0.988 5 C -0.566 4.566 6 H 0.069 0.931 7 C -0.184 4.184 8 N -0.540 5.540 9 Si 0.770 3.230 10 H -0.206 1.206 11 H -0.213 1.213 12 H -0.195 1.195 13 C -0.126 4.126 14 C -0.186 4.186 15 C -0.227 4.227 16 H 0.058 0.942 17 H 0.060 0.940 18 H 0.082 0.918 19 H 0.064 0.936 20 H 0.072 0.928 21 H 0.064 0.936 22 H 0.078 0.922 23 H 0.083 0.917 24 H 0.089 0.911 25 H 0.115 0.885 26 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -0.006 -4.737 -1.252 4.900 hybrid contribution -0.076 0.965 0.870 1.301 sum -0.082 -3.773 -0.382 3.793 Atomic orbital electron populations 1.21617 0.96055 1.00484 1.00936 1.21462 0.95837 0.97142 0.99911 1.18335 0.89570 0.91975 0.95008 0.98817 1.21460 1.35236 0.96927 1.03022 0.93068 1.25687 0.95337 0.98208 0.99166 1.70156 1.39146 1.09881 1.34798 0.85785 0.78620 0.77581 0.80975 1.20551 1.21299 1.19516 1.22120 0.97456 1.02435 0.90621 1.22334 1.00578 0.91908 1.03778 1.23114 1.02429 0.95232 1.01940 0.94155 0.93958 0.91842 0.93556 0.92771 0.93605 0.92182 0.91657 0.91128 0.88491 0.89137 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.01 9.64 71.98 0.69 -4.32 15 2 C -0.11 -4.39 5.26 30.60 0.16 -4.23 15 3 C 0.07 3.50 1.92 -11.54 -0.02 3.48 15 4 H -0.01 -0.35 7.90 -2.39 -0.02 -0.37 15 5 C -0.53 -29.17 7.92 25.60 0.20 -28.97 15 6 H 0.05 2.79 7.10 -2.91 -0.02 2.77 15 7 C 0.02 0.88 5.30 84.66 0.45 1.33 15 8 N -0.90 -52.06 11.46 21.45 0.25 -51.81 15 9 Si 0.94 44.18 29.54 68.60 2.03 46.20 15 10 H -0.28 -12.86 7.11 99.48 0.71 -12.15 15 11 H -0.29 -13.29 7.11 99.48 0.71 -12.58 15 12 H -0.27 -12.32 7.11 99.48 0.71 -11.62 15 13 C -0.11 -5.13 4.22 -10.79 -0.05 -5.18 15 14 C -0.15 -6.74 9.08 30.62 0.28 -6.47 15 15 C -0.19 -7.34 9.66 30.62 0.30 -7.05 15 16 H 0.04 1.51 8.14 -2.39 -0.02 1.49 15 17 H 0.04 1.68 7.17 -2.39 -0.02 1.67 15 18 H 0.06 1.93 8.14 -2.39 -0.02 1.91 15 19 H 0.05 1.90 8.14 -2.39 -0.02 1.88 15 20 H 0.05 2.01 7.08 -2.39 -0.02 1.99 15 21 H 0.25 14.18 8.31 -92.71 -0.77 13.41 15 22 H 0.06 3.06 8.11 -2.39 -0.02 3.04 15 23 H 0.06 3.18 8.05 -2.39 -0.02 3.16 15 24 H 0.07 3.10 8.14 -2.39 -0.02 3.08 15 25 H 0.10 3.24 8.14 -2.39 -0.02 3.22 15 26 H 0.09 3.26 7.56 -2.39 -0.02 3.24 15 Total: -1.00 -58.28 217.30 5.41 -52.87 By element: Atomic # 1 Polarization: 3.02 SS G_CDS: 1.12 Total: 4.14 kcal Atomic # 6 Polarization: -53.41 SS G_CDS: 2.01 Total: -51.40 kcal Atomic # 7 Polarization: -52.06 SS G_CDS: 0.25 Total: -51.81 kcal Atomic # 14 Polarization: 44.18 SS G_CDS: 2.03 Total: 46.20 kcal Total: -58.28 5.41 -52.87 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084327131.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.656 kcal (2) G-P(sol) polarization free energy of solvation -58.278 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.622 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.407 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.871 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.215 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.10 seconds