Wall clock time and date at job start Mon Mar 30 2020 01:55:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31074 * 1 3 3 Si 1.86801 * 119.99840 * 2 1 4 4 H 1.48504 * 109.46853 * 269.99546 * 3 2 1 5 5 H 1.48497 * 109.47178 * 29.99532 * 3 2 1 6 6 H 1.48505 * 109.47143 * 149.99460 * 3 2 1 7 7 C 1.39629 * 120.00207 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00018 * 180.02562 * 7 2 1 9 9 C 1.41103 * 119.99952 * 0.02562 * 7 2 1 10 10 C 1.39128 * 126.35323 * 180.02562 * 9 7 2 11 11 N 1.36505 * 106.50649 * 179.97438 * 10 9 7 12 12 H 0.97001 * 126.14947 * 179.97438 * 11 10 9 13 13 C 1.36530 * 107.70191 * 359.97438 * 11 10 9 14 14 N 1.37952 * 125.30647 * 179.97438 * 13 11 10 15 15 N 1.31002 * 109.39008 * 0.02562 * 13 11 10 16 16 H 0.96995 * 119.99885 * 0.02562 * 1 2 3 17 17 H 1.08002 * 126.74842 * 0.25475 * 10 9 7 18 18 H 0.97008 * 119.99704 * 359.97438 * 14 13 11 19 19 H 0.96994 * 120.00633 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3107 0.0000 0.0000 3 14 2.2447 1.6178 0.0000 4 1 2.4923 2.0464 -1.4001 5 1 1.4421 2.6527 0.6999 6 1 3.5423 1.4403 0.7002 7 6 2.0089 -1.2092 0.0005 8 1 3.0889 -1.2092 0.0010 9 6 1.3034 -2.4312 0.0005 10 6 1.8615 -3.7057 0.0015 11 7 0.8182 -4.5859 0.0017 12 1 0.8860 -5.5536 0.0020 13 6 -0.3378 -3.8595 0.0014 14 7 -1.6119 -4.3886 0.0010 15 7 -0.0486 -2.5818 0.0005 16 1 -0.4850 0.8400 -0.0004 17 1 2.9134 -3.9504 0.0063 18 1 -1.7376 -5.3504 0.0005 19 1 -2.3820 -3.7989 0.0004 RHF calculation, no. of doubly occupied orbitals= 27 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000104397627.mol2 19 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:55:17 Heat of formation + Delta-G solvation = 59.100625 kcal Electronic energy + Delta-G solvation = -7841.629732 eV Core-core repulsion = 6167.227124 eV Total energy + Delta-G solvation = -1674.402608 eV No. of doubly occupied orbitals = 27 Molecular weight (most abundant/longest-lived isotopes) = 153.060 amu Computer time = 0.08 seconds Orbital eigenvalues (eV) -39.57267 -33.56971 -32.59215 -30.37820 -27.43134 -24.12911 -19.71569 -19.48542 -17.59210 -15.85714 -15.12529 -14.54885 -13.51422 -13.32717 -12.47151 -11.89922 -11.01461 -10.80573 -10.15258 -9.81218 -9.56514 -9.05908 -7.87040 -7.83575 -6.14687 -6.07419 -3.83752 3.23565 3.33033 3.37271 3.89968 4.20868 4.32647 4.86063 5.21962 6.00145 6.73438 7.25138 7.47627 7.70444 7.89910 8.20253 8.38557 8.79187 9.19002 9.33877 9.53394 10.27167 10.86625 Molecular weight = 153.06amu Principal moments of inertia in cm(-1) A = 0.111421 B = 0.018374 C = 0.015861 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 251.239503 B = 1523.544419 C = 1764.941810 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.774 5.774 2 C 0.075 3.925 3 Si 0.899 3.101 4 H -0.275 1.275 5 H -0.282 1.282 6 H -0.267 1.267 7 C -0.455 4.455 8 H 0.074 0.926 9 C 0.219 3.781 10 C -0.269 4.269 11 N -0.604 5.604 12 H 0.385 0.615 13 C 0.425 3.575 14 N -0.857 5.857 15 N -0.496 5.496 16 H 0.263 0.737 17 H 0.140 0.860 18 H 0.388 0.612 19 H 0.410 0.590 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.971 -4.680 0.006 4.780 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.400 5.400 2 C -0.143 4.143 3 Si 0.725 3.275 4 H -0.201 1.201 5 H -0.208 1.208 6 H -0.191 1.191 7 C -0.491 4.491 8 H 0.092 0.908 9 C 0.096 3.904 10 C -0.394 4.394 11 N -0.221 5.221 12 H 0.218 0.782 13 C 0.071 3.929 14 N -0.412 5.412 15 N -0.229 5.229 16 H 0.074 0.926 17 H 0.158 0.842 18 H 0.215 0.785 19 H 0.240 0.760 Dipole moment (debyes) X Y Z Total from point charges -1.543 -3.724 0.011 4.031 hybrid contribution 0.694 -0.613 -0.008 0.926 sum -0.849 -4.337 0.004 4.419 Atomic orbital electron populations 1.70148 1.06580 1.26546 1.36739 1.25771 0.94729 1.00060 0.93691 0.86490 0.80265 0.82140 0.78575 1.20070 1.20785 1.19121 1.18433 0.93196 0.88548 1.48895 0.90756 1.18242 0.86845 0.91235 0.94105 1.22033 0.90450 0.89625 1.37279 1.42320 1.05930 1.07082 1.66780 0.78155 1.20162 0.81028 0.88013 1.03702 1.40506 1.02734 1.07939 1.90050 1.71527 1.15710 1.08160 1.27474 0.92620 0.84214 0.78524 0.76017 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -23.10 11.93 55.53 0.66 -22.44 13 2 C 0.08 2.15 5.49 -17.36 -0.10 2.06 13 3 Si 0.90 20.82 29.56 -169.99 -5.02 15.80 13 4 H -0.28 -6.25 7.11 56.52 0.40 -5.85 13 5 H -0.28 -6.39 7.11 56.52 0.40 -5.99 13 6 H -0.27 -6.03 7.11 56.52 0.40 -5.63 13 7 C -0.46 -13.60 9.37 -37.98 -0.36 -13.96 13 8 H 0.07 2.09 7.84 -52.49 -0.41 1.68 13 9 C 0.22 6.55 6.68 -84.58 -0.57 5.99 13 10 C -0.27 -6.99 12.11 -15.14 -0.18 -7.18 13 11 N -0.60 -13.55 6.16 -12.37 -0.08 -13.63 13 12 H 0.39 6.82 8.96 -40.82 -0.37 6.45 13 13 C 0.43 10.30 9.35 -319.94 -2.99 7.31 13 14 N -0.86 -15.46 9.04 30.16 0.27 -15.18 13 15 N -0.50 -14.58 9.53 -11.45 -0.11 -14.69 13 16 H 0.26 7.22 8.30 -40.82 -0.34 6.88 13 17 H 0.14 3.31 8.06 -52.49 -0.42 2.88 13 18 H 0.39 5.34 8.95 -40.82 -0.37 4.98 13 19 H 0.41 7.07 8.95 -40.82 -0.37 6.70 13 LS Contribution 181.62 15.07 2.74 2.74 Total: -1.00 -34.29 181.62 -6.79 -41.09 By element: Atomic # 1 Polarization: 13.17 SS G_CDS: -1.07 Total: 12.10 kcal Atomic # 6 Polarization: -1.59 SS G_CDS: -4.19 Total: -5.78 kcal Atomic # 7 Polarization: -66.69 SS G_CDS: 0.75 Total: -65.94 kcal Atomic # 14 Polarization: 20.82 SS G_CDS: -5.02 Total: 15.80 kcal Total LS contribution 2.74 Total: 2.74 kcal Total: -34.29 -6.79 -41.09 kcal The number of atoms in the molecule is 19 The average number of expansion shells was 13.00 The maximum number of expansion shells was 13 The minimum number of expansion shells was 13 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000104397627.mol2 19 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.187 kcal (2) G-P(sol) polarization free energy of solvation -34.292 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.895 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.794 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.086 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.101 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.08 seconds