Wall clock time and date at job start Mon Mar 30 2020 01:55:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30773 * 1 3 3 Si 1.86799 * 120.00140 * 2 1 4 4 H 1.48504 * 109.47111 * 240.00103 * 3 2 1 5 5 H 1.48502 * 109.47191 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.46779 * 120.00137 * 3 2 1 7 7 C 1.40144 * 119.99501 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99506 * 179.97438 * 7 2 1 9 9 C 1.40224 * 120.00413 * 359.97438 * 7 2 1 10 10 C 1.39695 * 126.59928 * 179.97438 * 9 7 2 11 11 C 1.39250 * 107.50429 * 180.02562 * 10 9 7 12 12 N 1.39890 * 125.54311 * 180.26723 * 11 10 9 13 13 N 1.31704 * 108.91393 * 359.97438 * 11 10 9 14 14 N 1.37516 * 126.59452 * 359.97438 * 9 7 2 15 15 H 0.97004 * 126.14906 * 0.02562 * 14 9 7 16 16 H 0.97004 * 119.99487 * 0.02562 * 1 2 3 17 17 H 1.08006 * 126.24968 * 0.02562 * 10 9 7 18 18 H 0.97000 * 119.99887 * 179.71416 * 12 11 10 19 19 H 0.96996 * 120.00280 * 359.71648 * 12 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3077 0.0000 0.0000 3 14 2.2418 1.6177 0.0000 4 1 3.0955 1.6964 -1.2125 5 1 1.2768 2.7465 -0.0006 6 1 3.0955 1.6963 1.2125 7 6 2.0083 -1.2137 -0.0005 8 1 3.0883 -1.2137 -0.0010 9 6 1.3072 -2.4281 -0.0005 10 6 1.8620 -3.7102 -0.0015 11 6 0.8095 -4.6220 -0.0017 12 7 0.9402 -6.0147 0.0027 13 7 -0.3290 -3.9598 -0.0003 14 7 -0.0589 -2.5860 0.0004 15 1 -0.7172 -1.8736 0.0009 16 1 -0.4849 0.8401 -0.0004 17 1 2.9150 -3.9504 -0.0021 18 1 0.1492 -6.5761 0.0063 19 1 1.8219 -6.4192 0.0020 RHF calculation, no. of doubly occupied orbitals= 27 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000107217086.mol2 19 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:55:32 Heat of formation + Delta-G solvation = 28.402428 kcal Electronic energy + Delta-G solvation = -7806.740749 eV Core-core repulsion = 6131.006967 eV Total energy + Delta-G solvation = -1675.733782 eV No. of doubly occupied orbitals = 27 Molecular weight (most abundant/longest-lived isotopes) = 153.060 amu Computer time = 0.07 seconds Orbital eigenvalues (eV) -40.70479 -35.99177 -34.44100 -31.04417 -29.44394 -27.15610 -22.03754 -20.78016 -19.70140 -17.36794 -17.06042 -15.95396 -15.62429 -14.80778 -14.23835 -13.87583 -12.98665 -12.88502 -12.74587 -11.90298 -11.72221 -11.01886 -10.73389 -9.32234 -8.87501 -8.35869 -6.62747 1.28278 1.42583 1.57390 1.90715 2.19824 2.54909 2.70213 3.31503 3.69948 4.97572 5.13612 5.38685 5.50677 5.79482 6.19543 6.40355 6.70389 7.07739 7.13597 7.63466 7.95576 8.22067 Molecular weight = 153.06amu Principal moments of inertia in cm(-1) A = 0.144272 B = 0.016613 C = 0.014976 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 194.031022 B = 1685.035706 C = 1869.224272 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.856 5.856 2 C 0.029 3.971 3 Si 1.016 2.984 4 H -0.257 1.257 5 H -0.266 1.266 6 H -0.256 1.256 7 C -0.478 4.478 8 H 0.101 0.899 9 C 0.257 3.743 10 C -0.477 4.477 11 C 0.333 3.667 12 N -0.842 5.842 13 N -0.468 5.468 14 N -0.507 5.507 15 H 0.435 0.565 16 H 0.302 0.698 17 H 0.120 0.880 18 H 0.399 0.601 19 H 0.412 0.588 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.272 0.690 0.007 3.344 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.487 5.487 2 C -0.184 4.184 3 Si 0.835 3.165 4 H -0.181 1.181 5 H -0.190 1.190 6 H -0.181 1.181 7 C -0.513 4.513 8 H 0.119 0.881 9 C 0.132 3.868 10 C -0.509 4.509 11 C 0.077 3.923 12 N -0.395 5.395 13 N -0.304 5.304 14 N -0.228 5.228 15 H 0.288 0.712 16 H 0.113 0.887 17 H 0.138 0.862 18 H 0.228 0.772 19 H 0.242 0.758 Dipole moment (debyes) X Y Z Total from point charges 1.823 0.753 0.009 1.973 hybrid contribution 0.721 0.494 -0.003 0.874 sum 2.545 1.246 0.006 2.833 Atomic orbital electron populations 1.68833 1.09376 1.32054 1.38480 1.27144 0.95711 1.05665 0.89863 0.84720 0.78125 0.73378 0.80273 1.18064 1.19032 1.18052 1.19325 0.95769 0.88959 1.47293 0.88060 1.19111 0.83616 0.94657 0.89458 1.20868 0.97465 0.91009 1.41578 1.19080 0.91941 0.86524 0.94723 1.41026 1.10688 0.99420 1.88403 1.76724 1.21255 0.89244 1.43167 1.46835 1.06042 1.03631 1.66292 0.71242 0.88654 0.86165 0.77238 0.75770 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -43.06 10.73 21.86 0.23 -42.83 13 2 C 0.03 1.43 5.50 85.31 0.47 1.90 13 3 Si 1.02 36.43 29.56 68.60 2.03 38.46 13 4 H -0.26 -8.90 7.11 99.48 0.71 -8.19 13 5 H -0.27 -8.96 7.11 99.48 0.71 -8.25 13 6 H -0.26 -8.89 7.11 99.48 0.71 -8.18 13 7 C -0.48 -25.76 9.36 23.22 0.22 -25.54 13 8 H 0.10 5.10 7.85 -2.91 -0.02 5.08 13 9 C 0.26 14.91 6.77 39.09 0.26 15.18 13 10 C -0.48 -25.93 10.87 22.87 0.25 -25.68 13 11 C 0.33 17.10 8.36 132.99 1.11 18.21 13 12 N -0.84 -31.60 9.15 -55.16 -0.50 -32.11 13 13 N -0.47 -26.26 12.68 -55.12 -0.70 -26.96 13 14 N -0.51 -29.44 7.10 -51.38 -0.36 -29.81 13 15 H 0.43 24.84 6.35 -213.37 -1.35 23.48 13 16 H 0.30 13.50 8.29 -92.71 -0.77 12.73 13 17 H 0.12 6.01 8.06 -2.91 -0.02 5.98 13 18 H 0.40 13.11 8.96 -92.71 -0.83 12.28 13 19 H 0.41 12.69 8.96 -92.71 -0.83 11.86 13 Total: -1.00 -63.67 179.86 1.30 -62.37 By element: Atomic # 1 Polarization: 48.51 SS G_CDS: -1.71 Total: 46.80 kcal Atomic # 6 Polarization: -18.24 SS G_CDS: 2.31 Total: -15.92 kcal Atomic # 7 Polarization: -130.37 SS G_CDS: -1.33 Total: -131.70 kcal Atomic # 14 Polarization: 36.43 SS G_CDS: 2.03 Total: 38.46 kcal Total: -63.67 1.30 -62.37 kcal The number of atoms in the molecule is 19 The average number of expansion shells was 13.00 The maximum number of expansion shells was 13 The minimum number of expansion shells was 13 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000107217086.mol2 19 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.776 kcal (2) G-P(sol) polarization free energy of solvation -63.670 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.105 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.297 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.373 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.402 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.07 seconds