Wall clock time and date at job start Mon Mar 30 2020 02:06:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30770 * 1 3 3 Si 1.86793 * 120.00024 * 2 1 4 4 H 1.48508 * 109.47269 * 274.97858 * 3 2 1 5 5 H 1.48497 * 109.47669 * 34.98139 * 3 2 1 6 6 H 1.48504 * 109.47211 * 154.98282 * 3 2 1 7 7 C 1.39937 * 119.99986 * 179.97438 * 2 1 3 8 8 H 1.07993 * 120.00258 * 185.70111 * 7 2 1 9 9 C 1.41835 * 119.99628 * 5.98058 * 7 2 1 10 10 C 1.42628 * 126.99630 * 173.72865 * 9 7 2 11 11 C 1.36155 * 103.84630 * 179.88786 * 10 9 7 12 12 N 1.38394 * 126.62893 * 180.09861 * 11 10 9 13 13 O 1.34328 * 106.73724 * 0.36875 * 11 10 9 14 14 N 1.20880 * 112.00483 * 359.74798 * 13 11 10 15 15 H 0.97008 * 120.00120 * 359.97438 * 1 2 3 16 16 H 1.07992 * 128.07352 * 0.02861 * 10 9 7 17 17 H 0.96995 * 119.99829 * 180.30073 * 12 11 10 18 18 H 0.96999 * 119.99567 * 0.30033 * 12 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3077 0.0000 0.0000 3 14 2.2417 1.6177 0.0000 4 1 2.3840 2.1072 -1.3949 5 1 1.4958 2.6200 0.8026 6 1 3.5880 1.4120 0.5921 7 6 2.0074 -1.2119 0.0005 8 1 3.0833 -1.2142 0.0934 9 6 1.3039 -2.4369 -0.1269 10 6 1.8674 -3.7395 -0.2685 11 6 0.7817 -4.5572 -0.3481 12 7 0.7934 -5.9336 -0.4921 13 8 -0.3031 -3.7692 -0.2659 14 7 -0.0077 -2.6033 -0.1443 15 1 -0.4851 0.8401 0.0004 16 1 2.9114 -4.0134 -0.3022 17 1 -0.0424 -6.4230 -0.5431 18 1 1.6376 -6.4088 -0.5419 RHF calculation, no. of doubly occupied orbitals= 27 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000107217090.mol2 18 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:06:22 Heat of formation + Delta-G solvation = 24.238260 kcal Electronic energy + Delta-G solvation = -7954.785717 eV Core-core repulsion = 6181.152701 eV Total energy + Delta-G solvation = -1773.633016 eV No. of doubly occupied orbitals = 27 Molecular weight (most abundant/longest-lived isotopes) = 154.048 amu Computer time = 0.07 seconds Orbital eigenvalues (eV) -44.46546 -35.89552 -35.86180 -33.23931 -29.52108 -28.15900 -23.25501 -22.24146 -19.39200 -17.75766 -17.57848 -17.35471 -16.48416 -15.65730 -14.47126 -13.62931 -13.02555 -12.89023 -12.67555 -12.12784 -11.83961 -11.51984 -10.89682 -10.24719 -8.46607 -8.44887 -6.53892 1.37106 1.40993 1.56594 1.57966 2.20320 2.28286 2.35113 3.41241 3.95383 4.56140 5.07695 5.12639 5.36825 5.50342 6.32402 6.49773 6.67576 6.95521 7.05699 8.53135 8.76411 Molecular weight = 154.05amu Principal moments of inertia in cm(-1) A = 0.149836 B = 0.016740 C = 0.015153 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 186.826273 B = 1672.262951 C = 1847.405868 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.822 5.822 2 C 0.016 3.984 3 Si 1.000 3.000 4 H -0.264 1.264 5 H -0.271 1.271 6 H -0.251 1.251 7 C -0.487 4.487 8 H 0.091 0.909 9 C 0.155 3.845 10 C -0.388 4.388 11 C 0.222 3.778 12 N -0.812 5.812 13 O 0.000 6.000 14 N -0.466 5.466 15 H 0.279 0.721 16 H 0.158 0.842 17 H 0.412 0.588 18 H 0.427 0.573 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.642 -5.240 -0.817 6.434 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.451 5.451 2 C -0.199 4.199 3 Si 0.820 3.180 4 H -0.189 1.189 5 H -0.196 1.196 6 H -0.174 1.174 7 C -0.524 4.524 8 H 0.110 0.890 9 C 0.008 3.992 10 C -0.416 4.416 11 C 0.056 3.944 12 N -0.369 5.369 13 O -0.038 6.038 14 N -0.204 5.204 15 H 0.089 0.911 16 H 0.175 0.825 17 H 0.242 0.758 18 H 0.262 0.738 Dipole moment (debyes) X Y Z Total from point charges 2.335 -4.399 -0.731 5.034 hybrid contribution 0.924 -0.096 -0.075 0.932 sum 3.258 -4.496 -0.806 5.610 Atomic orbital electron populations 1.70040 1.09191 1.29509 1.36403 1.26996 0.95751 1.05060 0.92081 0.84945 0.78868 0.75109 0.79127 1.18872 1.19552 1.17418 1.19155 0.94826 0.89104 1.49346 0.89042 1.20667 0.88657 0.94979 0.94863 1.21708 0.98761 0.92272 1.28909 1.21193 0.88476 0.86957 0.97805 1.40800 1.12638 0.98573 1.84880 1.84743 1.32126 1.13608 1.73339 1.74789 1.16480 0.90989 1.38170 0.91105 0.82473 0.75812 0.73831 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -49.77 12.04 21.82 0.26 -49.51 13 2 C 0.02 0.91 5.49 85.26 0.47 1.38 13 3 Si 1.00 41.67 29.56 68.60 2.03 43.69 13 4 H -0.26 -10.54 7.11 99.48 0.71 -9.84 13 5 H -0.27 -10.79 7.11 99.48 0.71 -10.08 13 6 H -0.25 -9.81 7.11 99.48 0.71 -9.10 13 7 C -0.49 -28.87 9.45 23.57 0.22 -28.65 13 8 H 0.09 5.01 7.85 -2.91 -0.02 4.98 13 9 C 0.15 9.35 6.81 41.07 0.28 9.63 13 10 C -0.39 -19.37 11.17 22.88 0.26 -19.12 13 11 C 0.22 9.92 8.63 83.17 0.72 10.64 13 12 N -0.81 -23.53 9.07 -166.83 -1.51 -25.04 13 13 O 0.00 0.00 11.18 68.93 0.77 0.78 13 14 N -0.47 -29.10 10.46 -51.99 -0.54 -29.64 13 15 H 0.28 15.29 8.30 -92.70 -0.77 14.52 13 16 H 0.16 6.82 8.06 -2.91 -0.02 6.80 13 17 H 0.41 9.59 8.95 -92.71 -0.83 8.76 13 18 H 0.43 9.46 8.95 -92.71 -0.83 8.63 13 Total: -1.00 -73.77 177.29 2.59 -71.18 By element: Atomic # 1 Polarization: 15.02 SS G_CDS: -0.35 Total: 14.67 kcal Atomic # 6 Polarization: -28.06 SS G_CDS: 1.94 Total: -26.12 kcal Atomic # 7 Polarization: -102.40 SS G_CDS: -1.79 Total: -104.19 kcal Atomic # 8 Polarization: 0.00 SS G_CDS: 0.77 Total: 0.78 kcal Atomic # 14 Polarization: 41.67 SS G_CDS: 2.03 Total: 43.69 kcal Total: -73.77 2.59 -71.18 kcal The number of atoms in the molecule is 18 The average number of expansion shells was 13.00 The maximum number of expansion shells was 13 The minimum number of expansion shells was 13 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000107217090.mol2 18 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.413 kcal (2) G-P(sol) polarization free energy of solvation -73.769 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.644 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.594 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.175 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.238 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.07 seconds