Wall clock time and date at job start Mon Mar 30 2020 02:16:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.47507 * 125.81323 * 2 1 4 4 C 1.54111 * 103.33894 * 179.97438 * 3 2 1 5 5 N 1.46897 * 104.35884 * 0.10080 * 4 3 2 6 6 C 1.30136 * 110.07634 * 359.93301 * 5 4 3 7 7 C 1.41460 * 123.05938 * 179.97438 * 6 5 4 8 8 H 1.08004 * 119.99870 * 180.02562 * 7 6 5 9 9 C 1.40144 * 120.00383 * 0.02839 * 7 6 5 10 10 N 1.30628 * 119.99472 * 0.02562 * 9 7 6 11 11 Si 1.86797 * 120.00098 * 179.97438 * 9 7 6 12 12 H 1.48502 * 109.46962 * 90.00161 * 11 9 7 13 13 H 1.48503 * 109.47136 * 209.99985 * 11 9 7 14 14 H 1.48503 * 109.47420 * 330.00237 * 11 9 7 15 15 H 1.08992 * 109.47008 * 179.97438 * 1 2 3 16 16 H 1.09002 * 109.46830 * 299.92738 * 1 2 3 17 17 H 1.09008 * 109.47026 * 59.91943 * 1 2 3 18 18 H 1.09004 * 110.66475 * 61.54684 * 3 2 1 19 19 H 1.09002 * 110.72445 * 298.45164 * 3 2 1 20 20 H 1.09002 * 110.47907 * 241.34445 * 4 3 2 21 21 H 1.09004 * 110.47828 * 118.85517 * 4 3 2 22 22 H 0.97003 * 119.99535 * 180.02562 * 10 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.3282 1.1962 0.0000 4 6 3.7522 0.6071 0.0007 5 7 3.5448 -0.8472 -0.0015 6 6 2.2717 -1.1169 -0.0018 7 6 1.7625 -2.4367 -0.0043 8 1 0.6955 -2.6038 -0.0048 9 6 2.6425 -3.5274 -0.0060 10 7 3.9331 -3.3252 -0.0048 11 14 1.9700 -5.2701 -0.0086 12 1 1.7917 -5.7298 -1.4093 13 1 2.9231 -6.1695 0.6900 14 1 0.6606 -5.2965 0.6915 15 1 -0.3633 -1.0276 -0.0005 16 1 -0.3633 0.5127 0.8907 17 1 -0.3633 0.5151 -0.8893 18 1 2.1592 1.7925 0.8967 19 1 2.1600 1.7932 -0.8964 20 1 4.2915 0.9140 0.8968 21 1 4.2933 0.9164 -0.8936 22 1 4.5422 -4.0801 -0.0064 RHF calculation, no. of doubly occupied orbitals= 28 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000108263528.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:16:50 Heat of formation + Delta-G solvation = 12.856326 kcal Electronic energy + Delta-G solvation = -8278.701359 eV Core-core repulsion = 6640.407880 eV Total energy + Delta-G solvation = -1638.293479 eV No. of doubly occupied orbitals = 28 Molecular weight (most abundant/longest-lived isotopes) = 154.080 amu Computer time = 0.09 seconds Orbital eigenvalues (eV) -39.91499 -35.15842 -33.24920 -30.87114 -27.29706 -26.64423 -22.52771 -21.20829 -17.92619 -17.19306 -16.49875 -15.94107 -15.06310 -14.19921 -14.15889 -13.31078 -12.98019 -12.70006 -12.65513 -12.52872 -12.13676 -11.75657 -11.62534 -10.55052 -9.55867 -8.21299 -8.15822 -6.57878 1.45990 1.46411 1.61076 2.31894 2.42389 2.90367 3.56309 4.12858 4.38549 4.42693 4.59700 4.85492 4.86522 4.94005 5.12877 5.25355 5.53659 6.20845 6.29044 6.30890 7.02695 7.58266 8.38858 8.71747 Molecular weight = 154.08amu Principal moments of inertia in cm(-1) A = 0.079106 B = 0.020993 C = 0.016849 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 353.869266 B = 1333.459479 C = 1661.439387 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.123 3.877 2 N -0.689 5.689 3 C 0.093 3.907 4 C 0.022 3.978 5 N -0.661 5.661 6 C 0.433 3.567 7 C -0.507 4.507 8 H 0.087 0.913 9 C 0.030 3.970 10 N -0.787 5.787 11 Si 0.991 3.009 12 H -0.265 1.265 13 H -0.275 1.275 14 H -0.253 1.253 15 H 0.069 0.931 16 H 0.052 0.948 17 H 0.052 0.948 18 H 0.063 0.937 19 H 0.063 0.937 20 H 0.045 0.955 21 H 0.045 0.955 22 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.133 1.759 0.004 6.380 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.021 4.021 2 N -0.417 5.417 3 C -0.032 4.032 4 C -0.109 4.109 5 N -0.399 5.399 6 C 0.179 3.821 7 C -0.546 4.546 8 H 0.105 0.895 9 C -0.189 4.189 10 N -0.414 5.414 11 Si 0.812 3.188 12 H -0.190 1.190 13 H -0.199 1.199 14 H -0.177 1.177 15 H 0.087 0.913 16 H 0.071 0.929 17 H 0.071 0.929 18 H 0.081 0.919 19 H 0.081 0.919 20 H 0.063 0.937 21 H 0.063 0.937 22 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -5.148 1.434 0.010 5.344 hybrid contribution -0.551 0.149 -0.012 0.571 sum -5.700 1.583 -0.002 5.915 Atomic orbital electron populations 1.21240 0.78337 1.02285 1.00205 1.48695 1.05587 1.04464 1.82982 1.22279 0.92242 0.88469 1.00227 1.22883 0.95028 0.94374 0.98640 1.75528 1.13680 1.06745 1.43956 1.20395 0.86290 0.88338 0.87102 1.19171 0.94551 0.88358 1.52551 0.89526 1.26784 0.94543 1.05187 0.92390 1.70204 1.04073 1.33231 1.33864 0.85097 0.79001 0.75602 0.79122 1.18990 1.19947 1.17687 0.91274 0.92948 0.92918 0.91909 0.91906 0.93697 0.93687 0.91812 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.12 4.50 11.21 127.77 1.43 5.93 14 2 N -0.69 -32.85 3.48 -724.84 -2.52 -35.38 14 3 C 0.09 3.93 7.76 86.56 0.67 4.60 14 4 C 0.02 1.08 8.02 86.68 0.69 1.78 14 5 N -0.66 -40.21 9.51 -342.90 -3.26 -43.47 14 6 C 0.43 24.97 7.36 134.72 0.99 25.96 14 7 C -0.51 -28.61 8.98 23.53 0.21 -28.40 14 8 H 0.09 4.46 6.36 -2.91 -0.02 4.44 14 9 C 0.03 1.64 5.50 85.33 0.47 2.11 14 10 N -0.79 -46.60 11.73 21.85 0.26 -46.35 14 11 Si 0.99 40.43 29.56 68.60 2.03 42.46 14 12 H -0.26 -10.39 7.11 99.48 0.71 -9.68 14 13 H -0.27 -10.85 7.11 99.48 0.71 -10.14 14 14 H -0.25 -9.71 7.11 99.48 0.71 -9.00 14 15 H 0.07 2.58 6.31 -2.39 -0.02 2.56 14 16 H 0.05 1.67 8.14 -2.39 -0.02 1.65 14 17 H 0.05 1.67 8.14 -2.38 -0.02 1.65 14 18 H 0.06 2.36 8.14 -2.39 -0.02 2.35 14 19 H 0.06 2.37 8.14 -2.39 -0.02 2.35 14 20 H 0.04 2.13 8.14 -2.39 -0.02 2.12 14 21 H 0.04 2.14 8.14 -2.38 -0.02 2.12 14 22 H 0.27 14.66 8.29 -92.71 -0.77 13.89 14 Total: -1.00 -68.62 194.24 2.17 -66.45 By element: Atomic # 1 Polarization: 3.09 SS G_CDS: 1.20 Total: 4.30 kcal Atomic # 6 Polarization: 7.51 SS G_CDS: 4.47 Total: 11.98 kcal Atomic # 7 Polarization: -119.66 SS G_CDS: -5.53 Total: -125.19 kcal Atomic # 14 Polarization: 40.43 SS G_CDS: 2.03 Total: 42.46 kcal Total: -68.62 2.17 -66.45 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000108263528.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.304 kcal (2) G-P(sol) polarization free energy of solvation -68.621 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.684 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.173 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.448 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.856 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.09 seconds