Wall clock time and date at job start Mon Mar 30 2020 02:08:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30662 * 1 3 3 Si 1.86807 * 120.00071 * 2 1 4 4 H 1.48502 * 109.46888 * 274.98176 * 3 2 1 5 5 H 1.48499 * 109.46858 * 34.98209 * 3 2 1 6 6 H 1.48495 * 109.47013 * 154.98060 * 3 2 1 7 7 C 1.40244 * 119.99979 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99730 * 173.99417 * 7 2 1 9 9 C 1.40213 * 119.99650 * 354.27483 * 7 2 1 10 10 N 1.33155 * 126.24804 * 5.44949 * 9 7 2 11 11 C 1.32648 * 109.76016 * 179.97438 * 10 9 7 12 12 N 1.39201 * 125.24835 * 180.02562 * 11 10 9 13 13 N 1.32082 * 109.50146 * 359.97438 * 11 10 9 14 14 N 1.37046 * 126.23940 * 185.12911 * 9 7 2 15 15 H 0.97000 * 126.95669 * 359.97438 * 14 9 7 16 16 H 0.97005 * 119.99436 * 0.02562 * 1 2 3 17 17 H 0.97004 * 119.99781 * 0.02562 * 12 11 10 18 18 H 0.96998 * 120.00209 * 179.97438 * 12 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3066 0.0000 0.0000 3 14 2.2407 1.6178 0.0000 4 1 2.3829 2.1072 -1.3948 5 1 1.4947 2.6200 0.8027 6 1 3.5868 1.4121 0.5921 7 6 2.0078 -1.2145 0.0005 8 1 3.0834 -1.2171 -0.0973 9 6 1.3119 -2.4257 0.1222 10 7 -0.0111 -2.5750 0.1422 11 6 -0.3155 -3.8598 0.2689 12 7 -1.6063 -4.3779 0.3243 13 7 0.7951 -4.5719 0.3335 14 7 1.8694 -3.6725 0.2362 15 1 2.8147 -3.8898 0.2482 16 1 -0.4849 0.8401 -0.0004 17 1 -2.3705 -3.7830 0.2684 18 1 -1.7417 -5.3338 0.4179 RHF calculation, no. of doubly occupied orbitals= 27 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000108280034.mol2 18 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:08:08 Heat of formation + Delta-G solvation = 53.547126 kcal Electronic energy + Delta-G solvation = -7945.437508 eV Core-core repulsion = 6205.368171 eV Total energy + Delta-G solvation = -1740.069337 eV No. of doubly occupied orbitals = 27 Molecular weight (most abundant/longest-lived isotopes) = 154.055 amu Computer time = 0.07 seconds Orbital eigenvalues (eV) -41.45849 -35.77397 -34.81509 -31.62400 -30.74067 -27.60518 -22.70352 -21.53744 -19.02807 -18.21016 -17.12502 -16.08543 -15.88906 -15.47822 -14.67112 -13.49018 -12.94748 -12.66246 -12.10364 -11.82757 -11.73448 -11.08976 -9.87847 -9.75941 -8.82609 -8.47999 -6.70778 1.31778 1.48534 1.64614 1.79254 2.25128 2.54103 2.77848 3.35709 3.53613 4.69704 5.22452 5.50461 6.05292 6.10726 6.41802 6.71732 7.04518 7.11614 7.41940 8.39017 8.50250 Molecular weight = 154.05amu Principal moments of inertia in cm(-1) A = 0.110236 B = 0.018585 C = 0.016005 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 253.940612 B = 1506.206195 C = 1748.988344 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.768 5.768 2 C 0.034 3.966 3 Si 1.006 2.994 4 H -0.262 1.262 5 H -0.270 1.270 6 H -0.251 1.251 7 C -0.476 4.476 8 H 0.106 0.894 9 C 0.397 3.603 10 N -0.626 5.626 11 C 0.443 3.557 12 N -0.822 5.822 13 N -0.477 5.477 14 N -0.566 5.566 15 H 0.426 0.574 16 H 0.284 0.716 17 H 0.410 0.590 18 H 0.411 0.589 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.355 1.814 0.127 2.268 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.392 5.392 2 C -0.189 4.189 3 Si 0.824 3.176 4 H -0.186 1.186 5 H -0.195 1.195 6 H -0.174 1.174 7 C -0.517 4.517 8 H 0.124 0.876 9 C 0.147 3.853 10 N -0.369 5.369 11 C 0.071 3.929 12 N -0.380 5.380 13 N -0.323 5.323 14 N -0.289 5.289 15 H 0.270 0.730 16 H 0.095 0.905 17 H 0.241 0.759 18 H 0.241 0.759 Dipole moment (debyes) X Y Z Total from point charges 0.922 1.414 0.176 1.697 hybrid contribution 0.467 0.254 0.002 0.532 sum 1.389 1.668 0.178 2.178 Atomic orbital electron populations 1.70118 1.09279 1.29923 1.29902 1.26988 0.95697 1.04600 0.91598 0.84858 0.78851 0.74534 0.79310 1.18625 1.19454 1.17386 1.18942 0.95485 0.87952 1.49355 0.87623 1.21202 0.87442 0.87005 0.89604 1.71160 1.12759 1.14369 1.38621 1.21152 0.88186 0.89425 0.94151 1.40575 1.00247 1.10082 1.87051 1.77683 0.93491 1.14869 1.46277 1.47543 1.07255 1.04165 1.69908 0.72990 0.90517 0.75930 0.75861 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -41.52 11.94 21.88 0.26 -41.26 13 2 C 0.03 1.72 5.49 85.35 0.47 2.19 13 3 Si 1.01 36.52 29.57 68.60 2.03 38.55 13 4 H -0.26 -9.11 7.11 99.48 0.71 -8.40 13 5 H -0.27 -9.47 7.11 99.48 0.71 -8.76 13 6 H -0.25 -8.58 7.11 99.48 0.71 -7.88 13 7 C -0.48 -25.21 9.46 23.24 0.22 -24.99 13 8 H 0.11 4.98 7.86 -2.91 -0.02 4.95 13 9 C 0.40 22.70 7.68 133.76 1.03 23.73 13 10 N -0.63 -37.09 9.43 -195.60 -1.84 -38.94 13 11 C 0.44 23.68 9.37 261.19 2.45 26.13 13 12 N -0.82 -33.42 9.11 -59.37 -0.54 -33.96 13 13 N -0.48 -25.53 12.83 -59.40 -0.76 -26.29 13 14 N -0.57 -29.38 7.58 -55.54 -0.42 -29.80 13 15 H 0.43 18.75 8.96 -213.10 -1.91 16.84 13 16 H 0.28 13.74 8.29 -92.70 -0.77 12.97 13 17 H 0.41 15.18 8.96 -92.71 -0.83 14.35 13 18 H 0.41 13.85 8.96 -92.71 -0.83 13.02 13 Total: -1.00 -68.20 176.81 0.64 -67.55 By element: Atomic # 1 Polarization: 39.33 SS G_CDS: -2.24 Total: 37.09 kcal Atomic # 6 Polarization: 22.88 SS G_CDS: 4.16 Total: 27.05 kcal Atomic # 7 Polarization: -166.94 SS G_CDS: -3.31 Total: -170.24 kcal Atomic # 14 Polarization: 36.52 SS G_CDS: 2.03 Total: 38.55 kcal Total: -68.20 0.64 -67.55 kcal The number of atoms in the molecule is 18 The average number of expansion shells was 13.00 The maximum number of expansion shells was 13 The minimum number of expansion shells was 13 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000108280034.mol2 18 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.100 kcal (2) G-P(sol) polarization free energy of solvation -68.197 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.903 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.644 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.553 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.547 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.07 seconds