Wall clock time and date at job start Mon Mar 30 2020 02:07:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31264 * 1 3 3 Si 1.86798 * 119.99755 * 2 1 4 4 H 1.48498 * 109.47175 * 270.00120 * 3 2 1 5 5 H 1.48501 * 109.47293 * 30.00213 * 3 2 1 6 6 H 1.48503 * 109.47052 * 149.99908 * 3 2 1 7 7 C 1.39001 * 119.99928 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99635 * 179.97438 * 7 2 1 9 9 N 1.37490 * 120.00017 * 0.27712 * 7 2 1 10 10 C 1.36940 * 126.85794 * 179.43551 * 9 7 2 11 11 C 1.35482 * 106.62776 * 179.84490 * 10 9 7 12 12 N 1.40263 * 125.55896 * 180.13521 * 11 10 9 13 13 N 1.33807 * 108.88271 * 0.42762 * 11 10 9 14 14 N 1.28738 * 110.01800 * 359.72584 * 13 11 10 15 15 H 0.97005 * 119.99943 * 359.97438 * 1 2 3 16 16 H 1.07996 * 126.68764 * 359.97438 * 10 9 7 17 17 H 0.97003 * 119.99860 * 180.31405 * 12 11 10 18 18 H 0.96996 * 120.00026 * 0.31538 * 12 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3126 0.0000 0.0000 3 14 2.2466 1.6178 0.0000 4 1 2.4940 2.0465 -1.4001 5 1 1.4440 2.6527 0.7001 6 1 3.5441 1.4402 0.7001 7 6 2.0076 -1.2038 -0.0005 8 1 3.0876 -1.2037 -0.0010 9 7 1.3202 -2.3945 -0.0068 10 6 1.8584 -3.6536 -0.0190 11 6 0.8170 -4.5203 -0.0177 12 7 0.9200 -5.9192 -0.0251 13 7 -0.3257 -3.8243 -0.0147 14 7 -0.0728 -2.5620 -0.0081 15 1 -0.4850 0.8401 0.0004 16 1 2.9083 -3.9065 -0.0259 17 1 0.1179 -6.4645 -0.0281 18 1 1.7934 -6.3411 -0.0272 RHF calculation, no. of doubly occupied orbitals= 27 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000108280040.mol2 18 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:07:42 Heat of formation + Delta-G solvation = 94.098070 kcal Electronic energy + Delta-G solvation = -7943.857245 eV Core-core repulsion = 6205.546329 eV Total energy + Delta-G solvation = -1738.310916 eV No. of doubly occupied orbitals = 27 Molecular weight (most abundant/longest-lived isotopes) = 154.055 amu Computer time = 0.06 seconds Orbital eigenvalues (eV) -39.82821 -34.26039 -32.76982 -31.07015 -27.10174 -25.26587 -21.30963 -19.85308 -17.87330 -15.46838 -15.25447 -14.81576 -13.78379 -13.75835 -12.73328 -11.78704 -11.40989 -11.35191 -10.57770 -10.35848 -9.63779 -9.16103 -9.07805 -8.51901 -6.72339 -6.41865 -4.45497 2.89729 3.00737 3.06822 3.44021 3.75313 4.46038 4.55871 4.90491 5.19346 6.42231 6.67304 6.82566 7.10717 7.44715 7.97715 8.43918 8.75109 8.82431 9.26345 10.25240 10.41249 Molecular weight = 154.05amu Principal moments of inertia in cm(-1) A = 0.148097 B = 0.017111 C = 0.015422 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 189.020057 B = 1636.027738 C = 1815.201671 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.762 5.762 2 C 0.044 3.956 3 Si 0.943 3.057 4 H -0.268 1.268 5 H -0.274 1.274 6 H -0.262 1.262 7 C -0.309 4.309 8 H 0.119 0.881 9 N -0.140 5.140 10 C -0.176 4.176 11 C 0.207 3.793 12 N -0.870 5.870 13 N -0.378 5.378 14 N -0.088 5.088 15 H 0.281 0.719 16 H 0.152 0.848 17 H 0.389 0.611 18 H 0.392 0.608 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.344 -1.132 -0.020 5.462 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.389 5.389 2 C -0.175 4.175 3 Si 0.766 3.234 4 H -0.193 1.193 5 H -0.198 1.198 6 H -0.186 1.186 7 C -0.446 4.446 8 H 0.137 0.863 9 N 0.083 4.917 10 C -0.330 4.330 11 C -0.034 4.034 12 N -0.423 5.423 13 N -0.242 5.242 14 N -0.066 5.066 15 H 0.092 0.908 16 H 0.169 0.831 17 H 0.216 0.784 18 H 0.219 0.781 Dipole moment (debyes) X Y Z Total from point charges 3.647 -0.182 -0.009 3.652 hybrid contribution 1.605 -0.096 -0.015 1.608 sum 5.252 -0.279 -0.024 5.260 Atomic orbital electron populations 1.70161 1.06373 1.28874 1.33504 1.25773 0.95803 1.00733 0.95198 0.85697 0.79380 0.79194 0.79164 1.19347 1.19849 1.18575 1.20078 0.92146 0.80546 1.51856 0.86325 1.46324 1.06744 1.04085 1.34505 1.21666 0.98016 0.85282 1.28014 1.18261 0.90122 0.85614 1.09357 1.40944 1.08753 1.01094 1.91466 1.74025 1.24052 1.00777 1.25312 1.82453 0.88767 1.05697 1.29636 0.90824 0.83062 0.78447 0.78129 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.76 -21.20 11.88 55.49 0.66 -20.54 13 2 C 0.04 1.13 5.50 -17.51 -0.10 1.03 13 3 Si 0.94 18.52 29.55 -169.99 -5.02 13.50 13 4 H -0.27 -5.17 7.11 56.52 0.40 -4.77 13 5 H -0.27 -5.30 7.11 56.52 0.40 -4.90 13 6 H -0.26 -4.91 7.11 56.52 0.40 -4.51 13 7 C -0.31 -8.24 10.31 -14.73 -0.15 -8.39 13 8 H 0.12 2.80 7.83 -52.49 -0.41 2.39 13 9 N -0.14 -4.01 3.78 -11.31 -0.04 -4.05 13 10 C -0.18 -4.45 11.62 -16.25 -0.19 -4.64 13 11 C 0.21 5.21 8.30 -153.88 -1.28 3.93 13 12 N -0.87 -16.39 9.17 30.93 0.28 -16.11 13 13 N -0.38 -10.93 12.34 30.93 0.38 -10.55 13 14 N -0.09 -2.74 11.71 60.35 0.71 -2.03 13 15 H 0.28 7.05 8.31 -40.82 -0.34 6.71 13 16 H 0.15 3.21 8.06 -52.49 -0.42 2.78 13 17 H 0.39 6.67 8.96 -40.82 -0.37 6.30 13 18 H 0.39 5.98 8.95 -40.82 -0.37 5.61 13 LS Contribution 177.59 15.07 2.68 2.68 Total: -1.00 -32.78 177.59 -2.77 -35.55 By element: Atomic # 1 Polarization: 10.31 SS G_CDS: -0.70 Total: 9.61 kcal Atomic # 6 Polarization: -6.35 SS G_CDS: -1.71 Total: -8.07 kcal Atomic # 7 Polarization: -55.27 SS G_CDS: 1.99 Total: -53.28 kcal Atomic # 14 Polarization: 18.52 SS G_CDS: -5.02 Total: 13.50 kcal Total LS contribution 2.68 Total: 2.68 kcal Total: -32.78 -2.77 -35.55 kcal The number of atoms in the molecule is 18 The average number of expansion shells was 13.00 The maximum number of expansion shells was 13 The minimum number of expansion shells was 13 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000108280040.mol2 18 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 129.653 kcal (2) G-P(sol) polarization free energy of solvation -32.783 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 96.870 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.772 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.555 kcal (6) G-S(sol) free energy of system = (1) + (5) 94.098 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.06 seconds