Wall clock time and date at job start Mon Mar 30 2020 02:16:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46492 * 1 3 3 C 1.39048 * 126.72968 * 2 1 4 4 C 1.32444 * 111.09876 * 179.97438 * 3 2 1 5 5 N 1.38595 * 111.21575 * 0.02562 * 4 3 2 6 6 C 1.36750 * 126.65032 * 179.97438 * 5 4 3 7 7 H 1.08004 * 120.00293 * 354.31197 * 6 5 4 8 8 C 1.38572 * 120.00003 * 174.30944 * 6 5 4 9 9 N 1.31747 * 119.99769 * 6.78329 * 8 6 5 10 10 Si 1.86793 * 120.00088 * 186.78703 * 8 6 5 11 11 H 1.48500 * 109.47228 * 89.99806 * 10 8 6 12 12 H 1.48500 * 109.47028 * 210.00036 * 10 8 6 13 13 H 1.48506 * 109.47368 * 329.99589 * 10 8 6 14 14 C 1.47163 * 106.69405 * 359.97438 * 5 4 3 15 15 H 1.09005 * 109.47250 * 270.00028 * 1 2 3 16 16 H 1.09002 * 109.47270 * 29.99724 * 1 2 3 17 17 H 1.08995 * 109.47982 * 150.00096 * 1 2 3 18 18 H 1.07996 * 124.44726 * 0.02562 * 3 2 1 19 19 H 1.07996 * 124.39050 * 179.97438 * 4 3 2 20 20 H 0.96997 * 120.00181 * 179.97438 * 9 8 6 21 21 H 1.08995 * 110.44213 * 118.74054 * 14 5 4 22 22 H 1.08996 * 110.43979 * 241.26087 * 14 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.2965 1.1144 0.0000 4 6 3.5719 0.7576 0.0006 5 7 3.7068 -0.6218 0.0004 6 6 4.8782 -1.3275 0.0003 7 1 5.8211 -0.8089 -0.0923 8 6 4.8555 -2.7079 0.1192 9 7 3.7064 -3.3520 0.0977 10 14 6.4540 -3.6553 0.3099 11 1 6.7835 -3.7851 1.7521 12 1 6.3026 -5.0067 -0.2868 13 1 7.5467 -2.9275 -0.3840 14 6 2.3451 -1.1797 0.0003 15 1 -0.3634 0.0000 1.0277 16 1 -0.3634 0.8900 -0.5138 17 1 -0.3635 -0.8899 -0.5138 18 1 1.9480 2.1366 0.0004 19 1 4.3995 1.4514 0.0003 20 1 3.6905 -4.3183 0.1805 21 1 2.1790 -1.7784 -0.8953 22 1 2.1790 -1.7786 0.8957 RHF calculation, no. of doubly occupied orbitals= 28 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000113684716.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:16:52 Heat of formation + Delta-G solvation = 68.885855 kcal Electronic energy + Delta-G solvation = -8265.410323 eV Core-core repulsion = 6629.546467 eV Total energy + Delta-G solvation = -1635.863856 eV No. of doubly occupied orbitals = 28 Molecular weight (most abundant/longest-lived isotopes) = 154.080 amu Computer time = 0.08 seconds Orbital eigenvalues (eV) -38.33895 -33.52973 -31.38640 -28.29811 -26.44813 -24.18000 -20.75474 -18.97117 -17.46991 -15.17150 -14.31170 -14.13636 -13.10242 -12.76453 -12.36541 -12.24626 -11.52359 -11.01407 -10.96985 -10.70432 -10.23477 -10.02503 -9.55649 -9.11341 -7.94330 -6.10510 -5.50496 -3.23755 3.25660 3.32140 3.35181 4.06695 4.23876 4.59989 5.35844 5.50088 5.87061 6.17746 6.29838 6.57716 6.99361 7.20868 7.35236 7.45311 7.61993 7.89760 8.49126 8.93998 9.15577 9.68273 10.26170 11.04010 Molecular weight = 154.08amu Principal moments of inertia in cm(-1) A = 0.109395 B = 0.017814 C = 0.015510 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 255.891369 B = 1571.387804 C = 1804.799920 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.148 3.852 2 N -0.677 5.677 3 C -0.117 4.117 4 C 0.019 3.981 5 N -0.496 5.496 6 C -0.263 4.263 7 H 0.093 0.907 8 C 0.005 3.995 9 N -0.906 5.906 10 Si 0.928 3.072 11 H -0.282 1.282 12 H -0.286 1.286 13 H -0.275 1.275 14 C 0.408 3.592 15 H 0.022 0.978 16 H 0.047 0.953 17 H 0.049 0.951 18 H 0.124 0.876 19 H 0.128 0.872 20 H 0.263 0.737 21 H 0.032 0.968 22 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.084 3.423 -0.032 4.007 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.004 3.996 2 N -0.403 5.403 3 C -0.243 4.243 4 C -0.113 4.113 5 N -0.196 5.196 6 C -0.391 4.391 7 H 0.110 0.890 8 C -0.194 4.194 9 N -0.548 5.548 10 Si 0.757 3.243 11 H -0.208 1.208 12 H -0.212 1.212 13 H -0.200 1.200 14 C 0.199 3.801 15 H 0.041 0.959 16 H 0.066 0.934 17 H 0.068 0.932 18 H 0.141 0.859 19 H 0.146 0.854 20 H 0.073 0.927 21 H 0.049 0.951 22 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -2.107 2.924 -0.031 3.604 hybrid contribution 0.718 -0.496 0.098 0.878 sum -1.389 2.427 0.067 2.798 Atomic orbital electron populations 1.20777 0.79748 1.00298 0.98794 1.46828 1.02571 1.05570 1.85344 1.20239 0.89185 0.90984 1.23859 1.20913 0.95228 0.86709 1.08420 1.42556 1.03782 1.01333 1.71968 1.19194 0.84135 0.89422 1.46353 0.88954 1.25080 0.98250 0.96609 0.99442 1.69973 1.23958 1.08383 1.52503 0.85874 0.81354 0.78921 0.78186 1.20849 1.21202 1.20024 1.20976 0.77175 0.82910 0.99035 0.95946 0.93441 0.93236 0.85881 0.85407 0.92671 0.95056 0.94497 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.15 2.69 11.35 59.84 0.68 3.37 14 2 N -0.68 -16.01 3.54 -185.20 -0.66 -16.67 14 3 C -0.12 -2.69 11.32 -16.19 -0.18 -2.87 14 4 C 0.02 0.46 11.19 -16.41 -0.18 0.27 14 5 N -0.50 -13.99 3.21 -118.53 -0.38 -14.37 14 6 C -0.26 -7.51 10.21 -15.23 -0.16 -7.67 14 7 H 0.09 2.48 7.83 -52.48 -0.41 2.07 14 8 C 0.01 0.15 5.48 -17.46 -0.10 0.05 14 9 N -0.91 -26.50 10.56 55.48 0.59 -25.92 14 10 Si 0.93 21.53 29.56 -169.99 -5.02 16.51 14 11 H -0.28 -6.49 7.11 56.52 0.40 -6.09 14 12 H -0.29 -6.61 7.11 56.52 0.40 -6.21 14 13 H -0.28 -6.17 7.11 56.52 0.40 -5.77 14 14 C 0.41 11.18 6.31 -62.28 -0.39 10.79 14 15 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 14 16 H 0.05 0.75 8.14 -51.93 -0.42 0.32 14 17 H 0.05 0.84 8.14 -51.93 -0.42 0.42 14 18 H 0.12 2.40 8.06 -52.49 -0.42 1.98 14 19 H 0.13 2.74 8.06 -52.49 -0.42 2.32 14 20 H 0.26 7.30 8.32 -40.82 -0.34 6.96 14 21 H 0.03 0.94 7.69 -51.93 -0.40 0.54 14 22 H 0.04 1.10 7.44 -51.93 -0.39 0.72 14 LS Contribution 195.86 15.07 2.95 2.95 Total: -1.00 -31.03 195.86 -5.30 -36.33 By element: Atomic # 1 Polarization: -0.34 SS G_CDS: -2.45 Total: -2.79 kcal Atomic # 6 Polarization: 4.28 SS G_CDS: -0.33 Total: 3.95 kcal Atomic # 7 Polarization: -56.50 SS G_CDS: -0.45 Total: -56.95 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -5.02 Total: 16.51 kcal Total LS contribution 2.95 Total: 2.95 kcal Total: -31.03 -5.30 -36.33 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000113684716.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.216 kcal (2) G-P(sol) polarization free energy of solvation -31.030 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.186 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.300 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.330 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.886 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.08 seconds