Wall clock time and date at job start Mon Mar 30 2020 02:16:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46492 * 1 3 3 C 1.39048 * 126.72968 * 2 1 4 4 C 1.32444 * 111.09876 * 179.97438 * 3 2 1 5 5 N 1.38595 * 111.21575 * 0.02562 * 4 3 2 6 6 C 1.36750 * 126.65032 * 179.97438 * 5 4 3 7 7 H 1.08004 * 120.00293 * 354.31197 * 6 5 4 8 8 C 1.38572 * 120.00003 * 174.30944 * 6 5 4 9 9 N 1.31747 * 119.99769 * 6.78329 * 8 6 5 10 10 Si 1.86793 * 120.00088 * 186.78703 * 8 6 5 11 11 H 1.48500 * 109.47228 * 89.99806 * 10 8 6 12 12 H 1.48500 * 109.47028 * 210.00036 * 10 8 6 13 13 H 1.48506 * 109.47368 * 329.99589 * 10 8 6 14 14 C 1.47163 * 106.69405 * 359.97438 * 5 4 3 15 15 H 1.09005 * 109.47250 * 270.00028 * 1 2 3 16 16 H 1.09002 * 109.47270 * 29.99724 * 1 2 3 17 17 H 1.08995 * 109.47982 * 150.00096 * 1 2 3 18 18 H 1.07996 * 124.44726 * 0.02562 * 3 2 1 19 19 H 1.07996 * 124.39050 * 179.97438 * 4 3 2 20 20 H 0.96997 * 120.00181 * 179.97438 * 9 8 6 21 21 H 1.08995 * 110.44213 * 118.74054 * 14 5 4 22 22 H 1.08996 * 110.43979 * 241.26087 * 14 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.2965 1.1144 0.0000 4 6 3.5719 0.7576 0.0006 5 7 3.7068 -0.6218 0.0004 6 6 4.8782 -1.3275 0.0003 7 1 5.8211 -0.8089 -0.0923 8 6 4.8555 -2.7079 0.1192 9 7 3.7064 -3.3520 0.0977 10 14 6.4540 -3.6553 0.3099 11 1 6.7835 -3.7851 1.7521 12 1 6.3026 -5.0067 -0.2868 13 1 7.5467 -2.9275 -0.3840 14 6 2.3451 -1.1797 0.0003 15 1 -0.3634 0.0000 1.0277 16 1 -0.3634 0.8900 -0.5138 17 1 -0.3635 -0.8899 -0.5138 18 1 1.9480 2.1366 0.0004 19 1 4.3995 1.4514 0.0003 20 1 3.6905 -4.3183 0.1805 21 1 2.1790 -1.7784 -0.8953 22 1 2.1790 -1.7786 0.8957 RHF calculation, no. of doubly occupied orbitals= 28 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000113684716.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:16:52 Heat of formation + Delta-G solvation = 48.923065 kcal Electronic energy + Delta-G solvation = -8266.275975 eV Core-core repulsion = 6629.546467 eV Total energy + Delta-G solvation = -1636.729508 eV No. of doubly occupied orbitals = 28 Molecular weight (most abundant/longest-lived isotopes) = 154.080 amu Computer time = 0.08 seconds Orbital eigenvalues (eV) -40.28990 -35.50125 -33.32168 -30.22995 -28.36739 -26.11455 -22.74864 -20.83665 -19.51359 -17.17328 -16.17190 -16.07896 -14.89396 -14.63990 -14.29246 -13.91612 -13.45145 -12.81223 -12.72461 -12.50066 -12.16296 -11.97340 -11.63663 -11.05216 -9.95151 -8.18759 -7.48861 -5.37205 1.43503 1.45307 1.57351 2.20847 2.33456 2.75800 3.25824 3.57076 4.40769 4.74184 4.84816 4.90845 5.01485 5.15066 5.18399 5.38726 5.68157 5.90550 6.46353 6.92187 7.26537 7.69806 8.23161 8.96687 Molecular weight = 154.08amu Principal moments of inertia in cm(-1) A = 0.109395 B = 0.017814 C = 0.015510 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 255.891369 B = 1571.387804 C = 1804.799920 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.139 3.861 2 N -0.683 5.683 3 C -0.090 4.090 4 C -0.020 4.020 5 N -0.528 5.528 6 C -0.287 4.287 7 H 0.102 0.898 8 C -0.051 4.051 9 N -0.942 5.942 10 Si 1.004 2.996 11 H -0.278 1.278 12 H -0.286 1.286 13 H -0.260 1.260 14 C 0.421 3.579 15 H 0.038 0.962 16 H 0.081 0.919 17 H 0.055 0.945 18 H 0.168 0.832 19 H 0.153 0.847 20 H 0.262 0.738 21 H -0.001 1.001 22 H 0.004 0.996 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.027 4.623 0.012 5.048 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.003 4.003 2 N -0.408 5.408 3 C -0.214 4.214 4 C -0.148 4.148 5 N -0.232 5.232 6 C -0.415 4.415 7 H 0.119 0.881 8 C -0.246 4.246 9 N -0.586 5.586 10 Si 0.828 3.172 11 H -0.204 1.204 12 H -0.212 1.212 13 H -0.184 1.184 14 C 0.210 3.790 15 H 0.057 0.943 16 H 0.100 0.900 17 H 0.073 0.927 18 H 0.186 0.814 19 H 0.170 0.830 20 H 0.071 0.929 21 H 0.017 0.983 22 H 0.022 0.978 Dipole moment (debyes) X Y Z Total from point charges -2.091 4.193 0.011 4.685 hybrid contribution 0.550 -0.740 0.078 0.926 sum -1.541 3.452 0.089 3.782 Atomic orbital electron populations 1.21138 0.76529 1.02302 1.00357 1.47183 1.04509 1.04490 1.84635 1.20986 0.88678 0.92467 1.19272 1.21487 0.97116 0.85874 1.10327 1.42739 1.03543 1.02796 1.74073 1.19643 0.84932 0.90226 1.46686 0.88061 1.26095 1.01964 0.97455 0.99111 1.70158 1.26263 1.08385 1.53775 0.84731 0.77171 0.77097 0.78164 1.20378 1.21195 1.18430 1.20417 0.78502 0.84024 0.96082 0.94340 0.90028 0.92657 0.81446 0.82976 0.92929 0.98346 0.97832 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.14 4.65 11.35 127.77 1.45 6.10 14 2 N -0.68 -31.21 3.54 -739.83 -2.62 -33.83 14 3 C -0.09 -3.84 11.32 82.43 0.93 -2.91 14 4 C -0.02 -0.95 11.19 82.50 0.92 -0.02 14 5 N -0.53 -30.07 3.21 -528.93 -1.70 -31.77 14 6 C -0.29 -16.59 10.21 84.01 0.86 -15.73 14 7 H 0.10 5.45 7.83 -2.91 -0.02 5.42 14 8 C -0.05 -2.91 5.48 84.79 0.46 -2.45 14 9 N -0.94 -56.84 10.56 21.61 0.23 -56.61 14 10 Si 1.00 44.55 29.56 68.60 2.03 46.57 14 11 H -0.28 -12.03 7.11 99.48 0.71 -11.32 14 12 H -0.29 -12.55 7.11 99.48 0.71 -11.85 14 13 H -0.26 -10.78 7.11 99.48 0.71 -10.08 14 14 C 0.42 23.57 6.31 170.44 1.08 24.64 14 15 H 0.04 1.19 8.14 -2.38 -0.02 1.17 14 16 H 0.08 2.21 8.14 -2.39 -0.02 2.19 14 17 H 0.05 1.79 8.14 -2.39 -0.02 1.77 14 18 H 0.17 5.65 8.06 -2.91 -0.02 5.63 14 19 H 0.15 6.25 8.06 -2.91 -0.02 6.23 14 20 H 0.26 14.96 8.32 -92.71 -0.77 14.19 14 21 H 0.00 -0.04 7.69 -2.39 -0.02 -0.06 14 22 H 0.00 0.27 7.44 -2.39 -0.02 0.25 14 Total: -1.00 -67.28 195.86 4.83 -62.45 By element: Atomic # 1 Polarization: 2.36 SS G_CDS: 1.19 Total: 3.54 kcal Atomic # 6 Polarization: 3.93 SS G_CDS: 5.70 Total: 9.63 kcal Atomic # 7 Polarization: -118.12 SS G_CDS: -4.09 Total: -122.20 kcal Atomic # 14 Polarization: 44.55 SS G_CDS: 2.03 Total: 46.57 kcal Total: -67.28 4.83 -62.45 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000113684716.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.376 kcal (2) G-P(sol) polarization free energy of solvation -67.285 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.092 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.831 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.453 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.923 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.08 seconds