Wall clock time and date at job start Mon Mar 30 2020 01:42:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13594 * 1 3 3 C 1.47207 * 179.97438 * 2 1 4 4 C 1.50696 * 112.84620 * 259.87805 * 3 2 1 5 5 H 1.07995 * 120.00332 * 230.33036 * 4 3 2 6 6 C 1.37880 * 119.99983 * 50.33871 * 4 3 2 7 7 N 1.31517 * 120.00210 * 359.97438 * 6 4 3 8 8 Si 1.86800 * 120.00019 * 179.97438 * 6 4 3 9 9 H 1.48503 * 109.46845 * 269.99914 * 8 6 4 10 10 H 1.48503 * 109.47399 * 29.99403 * 8 6 4 11 11 H 1.48498 * 109.47295 * 150.00010 * 8 6 4 12 12 C 1.53776 * 113.61476 * 31.07518 * 3 2 1 13 13 C 1.53956 * 87.01949 * 89.22967 * 12 3 2 14 14 C 1.53773 * 113.61260 * 128.68263 * 3 2 1 15 15 H 0.97000 * 119.99462 * 359.97438 * 7 6 4 16 16 H 1.09000 * 113.61545 * 203.74948 * 12 3 2 17 17 H 1.09007 * 113.61765 * 334.65352 * 12 3 2 18 18 H 1.08999 * 113.53613 * 270.80950 * 13 12 3 19 19 H 1.08997 * 113.74127 * 139.94337 * 13 12 3 20 20 H 1.08999 * 113.61555 * 25.35004 * 14 3 2 21 21 H 1.09004 * 113.61254 * 156.15912 * 14 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1359 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1930 0.2450 1.3671 5 1 3.9525 1.0007 1.5023 6 6 2.7587 -0.4965 2.4454 7 7 1.8335 -1.4166 2.2809 8 14 3.4843 -0.1941 4.1399 9 1 4.6699 -1.0672 4.3336 10 1 3.8931 1.2288 4.2568 11 1 2.4670 -0.5037 5.1765 12 6 3.2246 -1.2058 -0.7273 13 6 3.1732 -0.3566 -2.0104 14 6 3.2236 0.8816 -1.0999 15 1 1.4564 -1.5733 1.4010 16 1 4.2372 -1.4420 -0.4003 17 1 2.5729 -2.0792 -0.7542 18 1 2.2377 -0.4560 -2.5609 19 1 4.0519 -0.4676 -2.6456 20 1 2.5711 1.6911 -1.4272 21 1 4.2354 1.2185 -0.8742 RHF calculation, no. of doubly occupied orbitals= 27 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000116374576.mol2 21 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:42:04 Heat of formation + Delta-G solvation = 33.040922 kcal Electronic energy + Delta-G solvation = -7788.185134 eV Core-core repulsion = 6243.504315 eV Total energy + Delta-G solvation = -1544.680820 eV No. of doubly occupied orbitals = 27 Molecular weight (most abundant/longest-lived isotopes) = 151.069 amu Computer time = 0.08 seconds Orbital eigenvalues (eV) -38.50028 -34.56128 -32.56650 -26.65379 -24.79449 -23.25380 -19.97297 -17.73639 -15.49391 -14.28553 -13.83342 -13.46400 -13.00135 -12.08441 -11.72015 -11.62520 -11.07702 -10.80450 -10.50620 -10.43449 -10.13954 -9.94859 -9.39071 -8.61552 -8.46256 -6.50700 -4.30776 3.37465 3.41933 3.57464 3.94946 4.06849 4.44968 5.06393 5.32729 5.50061 5.57524 5.95767 6.17018 6.26365 6.55117 6.61140 6.84900 7.01165 7.21641 7.89180 8.19363 8.63733 8.88909 9.43808 10.85020 Molecular weight = 151.07amu Principal moments of inertia in cm(-1) A = 0.070189 B = 0.023386 C = 0.020318 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 398.827659 B = 1197.008531 C = 1377.738740 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.502 5.502 2 C 0.260 3.740 3 C 0.115 3.885 4 C -0.588 4.588 5 H 0.069 0.931 6 C 0.023 3.977 7 N -0.893 5.893 8 Si 1.075 2.925 9 H -0.284 1.284 10 H -0.285 1.285 11 H -0.284 1.284 12 C -0.120 4.120 13 C -0.151 4.151 14 C -0.114 4.114 15 H 0.273 0.727 16 H 0.088 0.912 17 H 0.050 0.950 18 H 0.066 0.934 19 H 0.060 0.940 20 H 0.052 0.948 21 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.695 1.839 -3.706 7.039 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.179 5.179 2 C -0.055 4.055 3 C 0.111 3.889 4 C -0.626 4.626 5 H 0.087 0.913 6 C -0.184 4.184 7 N -0.528 5.528 8 Si 0.902 3.098 9 H -0.210 1.210 10 H -0.211 1.211 11 H -0.209 1.209 12 C -0.159 4.159 13 C -0.189 4.189 14 C -0.153 4.153 15 H 0.086 0.914 16 H 0.107 0.893 17 H 0.069 0.931 18 H 0.085 0.915 19 H 0.079 0.921 20 H 0.071 0.929 21 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 3.876 1.333 -2.129 4.619 hybrid contribution 0.394 0.448 -1.531 1.643 sum 4.270 1.781 -3.660 5.899 Atomic orbital electron populations 1.80937 1.13638 1.10854 1.12489 1.29655 0.95220 0.90917 0.89708 1.16967 0.79642 0.95305 0.96967 1.21729 1.25188 1.24489 0.91200 0.91284 1.26032 0.94958 0.93046 1.04389 1.70794 1.24534 1.30208 1.27265 0.83448 0.75933 0.75906 0.74499 1.21020 1.21136 1.20938 1.23149 1.01499 0.96802 0.94469 1.22992 1.00639 0.98398 0.96829 1.22862 1.01082 0.95763 0.95554 0.91414 0.89304 0.93121 0.91496 0.92099 0.92875 0.89357 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.50 -13.55 18.54 42.15 0.78 -12.76 14 2 C 0.26 6.77 11.39 -20.76 -0.24 6.53 14 3 C 0.12 2.74 0.70 -157.64 -0.11 2.62 14 4 C -0.59 -15.39 8.40 -34.44 -0.29 -15.68 14 5 H 0.07 1.74 7.81 -52.49 -0.41 1.33 14 6 C 0.02 0.62 5.32 -17.82 -0.09 0.53 14 7 N -0.89 -26.62 13.35 55.43 0.74 -25.88 14 8 Si 1.07 24.15 29.90 -169.99 -5.08 19.07 14 9 H -0.28 -6.05 7.11 56.52 0.40 -5.65 14 10 H -0.29 -6.06 7.11 56.52 0.40 -5.65 14 11 H -0.28 -6.51 7.11 56.52 0.40 -6.11 14 12 C -0.12 -2.51 7.05 -25.83 -0.18 -2.69 14 13 C -0.15 -2.66 7.80 -25.83 -0.20 -2.86 14 14 C -0.11 -2.19 7.20 -25.93 -0.19 -2.38 14 15 H 0.27 8.17 5.49 -40.82 -0.22 7.94 14 16 H 0.09 1.80 8.09 -51.93 -0.42 1.38 14 17 H 0.05 1.09 8.09 -51.92 -0.42 0.67 14 18 H 0.07 1.16 8.13 -51.93 -0.42 0.74 14 19 H 0.06 0.91 8.14 -51.93 -0.42 0.48 14 20 H 0.05 0.98 8.08 -51.93 -0.42 0.56 14 21 H 0.09 1.58 8.09 -51.93 -0.42 1.16 14 LS Contribution 192.92 15.07 2.91 2.91 Total: -1.00 -29.85 192.92 -3.91 -33.76 By element: Atomic # 1 Polarization: -1.20 SS G_CDS: -1.95 Total: -3.16 kcal Atomic # 6 Polarization: -12.63 SS G_CDS: -1.30 Total: -13.93 kcal Atomic # 7 Polarization: -40.16 SS G_CDS: 1.52 Total: -38.64 kcal Atomic # 14 Polarization: 24.15 SS G_CDS: -5.08 Total: 19.07 kcal Total LS contribution 2.91 Total: 2.91 kcal Total: -29.85 -3.91 -33.76 kcal The number of atoms in the molecule is 21 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000116374576.mol2 21 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.800 kcal (2) G-P(sol) polarization free energy of solvation -29.848 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.952 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.911 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.759 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.041 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.08 seconds