Wall clock time and date at job start Mon Mar 30 2020 02:21:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52996 * 109.47286 * 2 1 4 4 H 1.09007 * 115.55004 * 29.27558 * 3 2 1 5 5 C 1.53000 * 117.49997 * 243.60886 * 3 2 1 6 6 C 1.53002 * 60.02940 * 252.49592 * 5 3 2 7 7 H 1.08999 * 117.49664 * 252.51862 * 6 5 3 8 8 C 1.52999 * 117.49968 * 107.50530 * 6 5 3 9 9 C 1.50699 * 109.47531 * 116.38655 * 8 6 5 10 10 H 1.08000 * 119.99844 * 0.02562 * 9 8 6 11 11 C 1.37869 * 120.00037 * 179.97438 * 9 8 6 12 12 N 1.31520 * 120.00109 * 0.02562 * 11 9 8 13 13 Si 1.86797 * 120.00172 * 180.02562 * 11 9 8 14 14 H 1.48509 * 109.46966 * 90.00206 * 13 11 9 15 15 H 1.48501 * 109.47698 * 210.00499 * 13 11 9 16 16 H 1.48503 * 109.47045 * 330.00409 * 13 11 9 17 17 H 1.09000 * 109.46540 * 60.00014 * 1 2 3 18 18 H 1.08994 * 109.46916 * 179.97438 * 1 2 3 19 19 H 1.08997 * 109.47122 * 300.00432 * 1 2 3 20 20 H 1.08999 * 109.47637 * 239.99610 * 2 1 3 21 21 H 1.09004 * 109.47028 * 119.99895 * 2 1 3 22 22 H 1.09002 * 117.49833 * 359.97438 * 5 3 2 23 23 H 1.09002 * 117.49953 * 144.99738 * 5 3 2 24 24 H 1.09007 * 109.46856 * 236.39135 * 8 6 5 25 25 H 1.09004 * 109.46879 * 356.38351 * 8 6 5 26 26 H 0.96997 * 119.99796 * 179.97438 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.3880 2.1717 0.4809 5 6 2.8443 1.9074 -1.2157 6 6 3.5508 1.6583 0.1184 7 1 3.8924 2.5295 0.6773 8 6 4.4361 0.4153 0.2277 9 6 5.8651 0.8348 0.4576 10 1 6.1167 1.8832 0.5200 11 6 6.8511 -0.1198 0.5894 12 7 6.5446 -1.3966 0.5139 13 14 8.6224 0.4001 0.8751 14 1 8.8775 0.5075 2.3342 15 1 9.5364 -0.6111 0.2859 16 1 8.8613 1.7174 0.2325 17 1 -0.3632 0.5138 -0.8900 18 1 -0.3633 -1.0276 -0.0005 19 1 -0.3633 0.5139 0.8899 20 1 1.8935 -0.5139 -0.8899 21 1 1.8934 -0.5138 0.8900 22 1 3.0104 1.1855 -2.0153 23 1 2.7214 2.9425 -1.5345 24 1 4.0987 -0.1987 1.0628 25 1 4.3703 -0.1599 -0.6959 26 1 7.2384 -2.0682 0.6062 RHF calculation, no. of doubly occupied orbitals= 29 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000167908630.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:21:18 Heat of formation + Delta-G solvation = -21.804452 kcal Electronic energy + Delta-G solvation = -8126.938637 eV Core-core repulsion = 6590.682497 eV Total energy + Delta-G solvation = -1536.256140 eV No. of doubly occupied orbitals = 29 Molecular weight (most abundant/longest-lived isotopes) = 154.105 amu Computer time = 0.11 seconds Orbital eigenvalues (eV) -39.07687 -35.01760 -32.93043 -30.13361 -25.35263 -24.68181 -22.09659 -20.06519 -18.57667 -16.61021 -16.17444 -15.17944 -15.01174 -14.25806 -13.92975 -13.40322 -12.95519 -12.81394 -12.57698 -12.41101 -12.16891 -11.85278 -11.46232 -11.29603 -10.80315 -10.45341 -10.25894 -8.20050 -6.31065 1.39305 1.41263 1.52495 2.40804 3.02673 3.14838 3.89048 4.12588 4.19493 4.38907 4.55988 4.71228 4.83149 4.89742 5.05671 5.21142 5.25644 5.31639 5.34076 5.52555 5.61548 5.68241 5.83795 6.27361 6.84621 7.37685 8.91733 Molecular weight = 154.11amu Principal moments of inertia in cm(-1) A = 0.100307 B = 0.012749 C = 0.011767 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 279.074811 B = 2195.802615 C = 2378.872181 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.094 4.094 3 C -0.146 4.146 4 H 0.118 0.882 5 C -0.172 4.172 6 C -0.155 4.155 7 H 0.090 0.910 8 C 0.061 3.939 9 C -0.542 4.542 10 H 0.058 0.942 11 C -0.002 4.002 12 N -0.935 5.935 13 Si 0.968 3.032 14 H -0.271 1.271 15 H -0.281 1.281 16 H -0.264 1.264 17 H 0.063 0.937 18 H 0.059 0.941 19 H 0.062 0.938 20 H 0.045 0.955 21 H 0.045 0.955 22 H 0.078 0.922 23 H 0.107 0.893 24 H -0.008 1.008 25 H -0.010 1.010 26 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.618 4.554 -1.130 8.947 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.132 4.132 3 C -0.164 4.164 4 H 0.136 0.864 5 C -0.208 4.208 6 C -0.173 4.173 7 H 0.108 0.892 8 C 0.024 3.976 9 C -0.580 4.580 10 H 0.076 0.924 11 C -0.200 4.200 12 N -0.575 5.575 13 Si 0.792 3.208 14 H -0.197 1.197 15 H -0.206 1.206 16 H -0.188 1.188 17 H 0.082 0.918 18 H 0.078 0.922 19 H 0.081 0.919 20 H 0.064 0.936 21 H 0.063 0.937 22 H 0.096 0.904 23 H 0.125 0.875 24 H 0.010 0.990 25 H 0.008 0.992 26 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -7.553 4.386 -1.130 8.807 hybrid contribution 1.112 -0.157 0.138 1.132 sum -6.441 4.229 -0.992 7.768 Atomic orbital electron populations 1.21690 0.93260 1.02060 1.02421 1.21040 0.97269 0.94216 1.00642 1.22541 0.93382 0.98129 1.02334 0.86404 1.23099 1.04557 1.02011 0.91180 1.22531 0.93492 1.00261 1.01018 0.89220 1.18465 0.93080 0.91715 0.94363 1.21725 0.94114 0.93155 1.48962 0.92353 1.26011 1.04151 0.94862 0.94958 1.70104 1.34948 1.01027 1.51420 0.85409 0.78502 0.78276 0.78622 1.19655 1.20608 1.18794 0.91837 0.92183 0.91863 0.93644 0.93654 0.90386 0.87488 0.98979 0.99175 0.92753 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.44 9.87 71.98 0.71 -2.73 15 2 C -0.09 -3.23 5.30 30.59 0.16 -3.07 15 3 C -0.15 -5.09 5.74 -10.77 -0.06 -5.16 15 4 H 0.12 3.47 8.07 -2.38 -0.02 3.45 15 5 C -0.17 -6.22 9.82 30.60 0.30 -5.92 15 6 C -0.15 -6.79 5.70 -10.77 -0.06 -6.85 15 7 H 0.09 3.88 8.00 -2.39 -0.02 3.86 15 8 C 0.06 3.35 4.34 29.85 0.13 3.48 15 9 C -0.54 -32.09 9.08 25.60 0.23 -31.86 15 10 H 0.06 3.32 7.68 -2.91 -0.02 3.30 15 11 C 0.00 -0.14 5.46 84.65 0.46 0.32 15 12 N -0.93 -58.29 13.29 21.45 0.28 -58.00 15 13 Si 0.97 45.27 29.54 68.60 2.03 47.29 15 14 H -0.27 -12.21 7.11 99.48 0.71 -11.50 15 15 H -0.28 -12.77 7.11 99.48 0.71 -12.06 15 16 H -0.26 -11.80 7.11 99.48 0.71 -11.09 15 17 H 0.06 1.43 8.14 -2.39 -0.02 1.41 15 18 H 0.06 1.37 8.14 -2.39 -0.02 1.35 15 19 H 0.06 1.42 8.14 -2.39 -0.02 1.40 15 20 H 0.04 1.67 7.87 -2.39 -0.02 1.65 15 21 H 0.04 1.73 7.60 -2.39 -0.02 1.71 15 22 H 0.08 2.96 7.92 -2.39 -0.02 2.94 15 23 H 0.11 3.25 8.14 -2.39 -0.02 3.23 15 24 H -0.01 -0.48 7.60 -2.38 -0.02 -0.50 15 25 H -0.01 -0.60 7.87 -2.39 -0.02 -0.62 15 26 H 0.26 15.37 8.31 -92.71 -0.77 14.60 15 Total: -1.00 -64.64 222.96 5.30 -59.33 By element: Atomic # 1 Polarization: 2.04 SS G_CDS: 1.12 Total: 3.16 kcal Atomic # 6 Polarization: -53.66 SS G_CDS: 1.87 Total: -51.78 kcal Atomic # 7 Polarization: -58.29 SS G_CDS: 0.28 Total: -58.00 kcal Atomic # 14 Polarization: 45.27 SS G_CDS: 2.03 Total: 47.29 kcal Total: -64.64 5.30 -59.33 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000167908630.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.528 kcal (2) G-P(sol) polarization free energy of solvation -64.637 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.109 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.304 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.333 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.804 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.11 seconds