Wall clock time and date at job start Mon Mar 30 2020 01:54:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.29852 * 127.31949 * 2 1 4 4 O 1.20567 * 112.93985 * 179.72176 * 3 2 1 5 5 C 1.33762 * 113.30252 * 0.51557 * 4 3 2 6 6 C 1.39661 * 105.87330 * 359.51076 * 5 4 3 7 7 C 1.41477 * 128.74371 * 180.24241 * 6 5 4 8 8 H 1.07996 * 119.99822 * 180.02562 * 7 6 5 9 9 C 1.39724 * 119.99726 * 0.02624 * 7 6 5 10 10 N 1.31007 * 120.00105 * 0.02562 * 9 7 6 11 11 Si 1.86807 * 119.99861 * 179.97438 * 9 7 6 12 12 H 1.48500 * 109.47022 * 60.00370 * 11 9 7 13 13 H 1.48491 * 109.47219 * 180.02562 * 11 9 7 14 14 H 1.48505 * 109.47064 * 300.00385 * 11 9 7 15 15 H 1.09003 * 109.46605 * 269.97878 * 1 2 3 16 16 H 1.09000 * 109.46946 * 29.97124 * 1 2 3 17 17 H 1.08995 * 109.47638 * 149.97761 * 1 2 3 18 18 H 1.08002 * 127.06650 * 179.78258 * 5 4 3 19 19 H 0.97009 * 119.99572 * 179.97438 * 10 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2942 1.0327 0.0000 4 8 3.4621 0.7333 0.0054 5 6 3.6696 -0.5882 -0.0010 6 6 2.4018 -1.1739 -0.0006 7 6 2.0608 -2.5470 -0.0013 8 1 1.0230 -2.8456 -0.0013 9 6 3.0669 -3.5166 -0.0019 10 7 4.3259 -3.1543 -0.0013 11 14 2.6168 -5.3296 -0.0020 12 1 1.8176 -5.6411 -1.2142 13 1 3.8562 -6.1474 -0.0020 14 1 1.8185 -5.6415 1.2108 15 1 -0.3633 -0.0004 1.0277 16 1 -0.3633 0.8902 -0.5134 17 1 -0.3634 -0.8897 -0.5141 18 1 4.6220 -1.0975 -0.0014 19 1 5.0243 -3.8275 -0.0014 RHF calculation, no. of doubly occupied orbitals= 27 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000169222529.mol2 19 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:54:06 Heat of formation + Delta-G solvation = 16.203535 kcal Electronic energy + Delta-G solvation = -7905.419113 eV Core-core repulsion = 6196.863596 eV Total energy + Delta-G solvation = -1708.555517 eV No. of doubly occupied orbitals = 27 Molecular weight (most abundant/longest-lived isotopes) = 153.053 amu Computer time = 0.07 seconds Orbital eigenvalues (eV) -44.62344 -36.15660 -34.45998 -31.61473 -29.21370 -27.85717 -22.88564 -21.18712 -19.19085 -17.73361 -17.59893 -16.47400 -15.22943 -14.30089 -13.97634 -13.91547 -13.24029 -12.99205 -12.96335 -12.31751 -11.88686 -11.46090 -11.26165 -10.26805 -9.70331 -8.64512 -6.44772 1.23647 1.38270 1.42532 1.55577 1.96351 2.23140 3.25256 3.27415 3.91135 4.14352 4.80409 4.84091 4.96349 5.19078 5.43303 5.55783 5.79428 6.35690 6.68805 6.86466 8.10578 8.40826 Molecular weight = 153.05amu Principal moments of inertia in cm(-1) A = 0.084203 B = 0.020615 C = 0.016710 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 332.451176 B = 1357.903434 C = 1675.209592 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.047 4.047 2 C -0.071 4.071 3 N -0.405 5.405 4 O 0.047 5.953 5 C -0.235 4.235 6 C -0.043 4.043 7 C -0.453 4.453 8 H 0.087 0.913 9 C 0.016 3.984 10 N -0.848 5.848 11 Si 1.003 2.997 12 H -0.260 1.260 13 H -0.270 1.270 14 H -0.260 1.260 15 H 0.078 0.922 16 H 0.075 0.925 17 H 0.079 0.921 18 H 0.217 0.783 19 H 0.290 0.710 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.538 -3.126 0.004 4.721 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C -0.232 4.232 3 N -0.114 5.114 4 O -0.018 6.018 5 C -0.315 4.315 6 C -0.049 4.049 7 C -0.484 4.484 8 H 0.105 0.895 9 C -0.195 4.195 10 N -0.477 5.477 11 Si 0.824 3.176 12 H -0.184 1.184 13 H -0.194 1.194 14 H -0.184 1.184 15 H 0.096 0.904 16 H 0.094 0.906 17 H 0.098 0.902 18 H 0.233 0.767 19 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -3.515 -1.930 0.002 4.010 hybrid contribution 0.234 -1.417 0.007 1.436 sum -3.281 -3.347 0.009 4.686 Atomic orbital electron populations 1.19924 0.84551 1.03092 1.02893 1.25428 0.99392 0.89442 1.08901 1.72895 0.90934 1.26450 1.21154 1.84082 1.19932 1.26693 1.71140 1.26735 1.01790 0.79773 1.23179 1.20504 0.90389 0.94500 0.99460 1.19061 0.95166 0.88619 1.45556 0.89458 1.26794 0.93994 1.06572 0.92125 1.69519 1.01436 1.38022 1.38740 0.84907 0.78593 0.74194 0.79929 1.18386 1.19403 1.18413 0.90361 0.90607 0.90191 0.76749 0.89973 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.05 -1.80 10.48 71.24 0.75 -1.06 13 2 C -0.07 -3.62 7.60 45.33 0.34 -3.28 13 3 N -0.41 -21.38 11.96 -43.72 -0.52 -21.91 13 4 O 0.05 2.57 11.06 74.66 0.83 3.39 13 5 C -0.24 -13.21 11.34 68.16 0.77 -12.43 13 6 C -0.04 -2.44 6.28 -19.66 -0.12 -2.56 13 7 C -0.45 -24.34 9.46 23.43 0.22 -24.12 13 8 H 0.09 4.34 7.84 -2.91 -0.02 4.32 13 9 C 0.02 0.78 5.49 85.18 0.47 1.25 13 10 N -0.85 -44.02 10.61 21.79 0.23 -43.79 13 11 Si 1.00 37.71 29.56 68.60 2.03 39.74 13 12 H -0.26 -9.41 7.11 99.48 0.71 -8.70 13 13 H -0.27 -9.64 7.11 99.48 0.71 -8.93 13 14 H -0.26 -9.42 7.11 99.48 0.71 -8.72 13 15 H 0.08 2.69 8.14 -2.39 -0.02 2.67 13 16 H 0.08 2.56 8.14 -2.39 -0.02 2.54 13 17 H 0.08 2.86 8.14 -2.39 -0.02 2.84 13 18 H 0.22 12.02 6.10 -2.91 -0.02 12.00 13 19 H 0.29 13.56 8.30 -92.70 -0.77 12.79 13 Total: -1.00 -60.18 181.82 6.24 -53.94 By element: Atomic # 1 Polarization: 9.56 SS G_CDS: 1.25 Total: 10.81 kcal Atomic # 6 Polarization: -44.62 SS G_CDS: 2.43 Total: -42.19 kcal Atomic # 7 Polarization: -65.40 SS G_CDS: -0.29 Total: -65.69 kcal Atomic # 8 Polarization: 2.57 SS G_CDS: 0.83 Total: 3.39 kcal Atomic # 14 Polarization: 37.71 SS G_CDS: 2.03 Total: 39.74 kcal Total: -60.18 6.24 -53.94 kcal The number of atoms in the molecule is 19 The average number of expansion shells was 13.00 The maximum number of expansion shells was 13 The minimum number of expansion shells was 13 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000169222529.mol2 19 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.142 kcal (2) G-P(sol) polarization free energy of solvation -60.183 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.959 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.244 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.938 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.204 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.07 seconds