Wall clock time and date at job start Mon Mar 30 2020 02:00:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86798 * 120.00211 * 2 1 4 4 H 1.48506 * 109.47297 * 89.99752 * 3 2 1 5 5 H 1.48503 * 109.47261 * 329.99933 * 3 2 1 6 6 H 1.48500 * 109.47454 * 209.99926 * 3 2 1 7 7 C 1.38817 * 120.00154 * 180.02562 * 2 1 3 8 8 H 1.07993 * 119.99825 * 180.02562 * 7 2 1 9 9 N 1.36939 * 119.99459 * 359.97438 * 7 2 1 10 10 C 1.46499 * 119.99547 * 179.97438 * 9 7 2 11 11 H 1.09000 * 110.34583 * 35.83873 * 10 9 7 12 12 C 1.51097 * 110.38840 * 273.54546 * 10 9 7 13 13 C 1.30523 * 111.10529 * 224.75094 * 12 10 9 14 14 C 1.51096 * 111.10703 * 0.02562 * 13 12 10 15 15 C 1.54634 * 104.72382 * 16.43480 * 14 13 12 16 16 H 0.96993 * 120.00007 * 179.97438 * 1 2 3 17 17 H 0.96998 * 120.00268 * 0.02562 * 9 7 2 18 18 H 1.08004 * 124.44972 * 44.78109 * 12 10 9 19 19 H 1.08007 * 124.44827 * 180.02562 * 13 12 10 20 20 H 1.09004 * 110.39036 * 135.24570 * 14 13 12 21 21 H 1.09001 * 110.39129 * 257.62490 * 14 13 12 22 22 H 1.09001 * 111.04027 * 217.33742 * 15 14 13 23 23 H 1.09000 * 111.03990 * 93.39801 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0464 1.4001 5 1 1.4477 2.6527 -0.7001 6 1 3.5478 1.4401 -0.7000 7 6 2.0103 -1.2022 -0.0005 8 1 3.0902 -1.2021 -0.0001 9 7 1.3255 -2.3880 -0.0005 10 6 2.0580 -3.6568 -0.0017 11 1 2.9655 -3.5710 0.5960 12 6 2.3960 -4.0682 -1.4157 13 6 2.1495 -5.3354 -1.6081 14 6 1.6054 -5.9803 -0.3547 15 6 1.1611 -4.7964 0.5353 16 1 -0.4850 -0.8400 -0.0004 17 1 0.3556 -2.3880 -0.0005 18 1 2.7903 -3.4014 -2.1683 19 1 2.3129 -5.8549 -2.5409 20 1 0.7531 -6.6162 -0.5940 21 1 2.3837 -6.5586 0.1434 22 1 1.3705 -4.9967 1.5861 23 1 0.1059 -4.5683 0.3849 RHF calculation, no. of doubly occupied orbitals= 28 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000196755425.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:00:18 Heat of formation + Delta-G solvation = 4.203532 kcal Electronic energy + Delta-G solvation = -7989.170531 eV Core-core repulsion = 6415.927749 eV Total energy + Delta-G solvation = -1573.242781 eV No. of doubly occupied orbitals = 28 Molecular weight (most abundant/longest-lived isotopes) = 153.085 amu Computer time = 0.10 seconds Orbital eigenvalues (eV) -39.62467 -35.98845 -32.36703 -29.84893 -27.59135 -25.11781 -21.70799 -19.78403 -19.20682 -17.39357 -16.38476 -15.96210 -15.50280 -14.41004 -13.46583 -12.79879 -12.75721 -12.72239 -12.45372 -12.21994 -12.08949 -11.87405 -11.23158 -10.98873 -9.83508 -9.16575 -8.43378 -5.36379 1.41002 1.56493 1.67849 1.82116 2.70201 3.36443 3.73252 3.84096 3.97872 4.23946 4.56069 4.58668 4.86654 4.92504 4.98288 5.22671 5.34403 5.54990 5.65398 6.03931 6.45974 7.07083 7.97258 8.09194 9.08941 Molecular weight = 153.08amu Principal moments of inertia in cm(-1) A = 0.115663 B = 0.014503 C = 0.013780 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 242.025076 B = 1930.120221 C = 2031.386086 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.976 5.976 2 C -0.106 4.106 3 Si 1.132 2.868 4 H -0.282 1.282 5 H -0.291 1.291 6 H -0.274 1.274 7 C -0.335 4.335 8 H 0.064 0.936 9 N -0.747 5.747 10 C 0.183 3.817 11 H 0.046 0.954 12 C -0.194 4.194 13 C -0.167 4.167 14 C -0.086 4.086 15 C -0.127 4.127 16 H 0.243 0.757 17 H 0.359 0.641 18 H 0.096 0.904 19 H 0.141 0.859 20 H 0.087 0.913 21 H 0.093 0.907 22 H 0.081 0.919 23 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.496 -9.688 -0.768 10.708 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.624 5.624 2 C -0.296 4.296 3 Si 0.957 3.043 4 H -0.209 1.209 5 H -0.218 1.218 6 H -0.199 1.199 7 C -0.466 4.466 8 H 0.082 0.918 9 N -0.388 5.388 10 C 0.075 3.925 11 H 0.064 0.936 12 C -0.215 4.215 13 C -0.186 4.186 14 C -0.124 4.124 15 C -0.165 4.165 16 H 0.054 0.946 17 H 0.192 0.808 18 H 0.114 0.886 19 H 0.159 0.841 20 H 0.105 0.895 21 H 0.112 0.888 22 H 0.099 0.901 23 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 4.596 -8.039 -0.739 9.290 hybrid contribution -0.252 -1.398 -0.155 1.429 sum 4.344 -9.437 -0.894 10.428 Atomic orbital electron populations 1.70957 1.07188 1.27857 1.56408 1.27287 0.97121 1.04745 1.00472 0.82569 0.73451 0.71332 0.76981 1.20893 1.21775 1.19938 1.20467 0.92318 0.87237 1.46609 0.91775 1.42704 1.04519 1.01817 1.89778 1.20426 0.94267 0.85330 0.92509 0.93627 1.24065 1.00826 0.97090 0.99512 1.23438 1.00508 0.95095 0.99518 1.21299 1.01244 0.96758 0.93063 1.22725 0.98931 0.94636 1.00201 0.94627 0.80836 0.88620 0.84097 0.89472 0.88827 0.90062 0.92194 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.98 -63.04 13.70 21.65 0.30 -62.75 14 2 C -0.11 -6.34 5.50 84.86 0.47 -5.87 14 3 Si 1.13 53.42 29.92 68.60 2.05 55.48 14 4 H -0.28 -12.63 7.11 99.48 0.71 -11.92 14 5 H -0.29 -13.83 7.11 99.48 0.71 -13.13 14 6 H -0.27 -11.84 7.11 99.48 0.71 -11.13 14 7 C -0.33 -19.77 9.96 84.03 0.84 -18.93 14 8 H 0.06 3.71 7.83 -2.91 -0.02 3.69 14 9 N -0.75 -40.13 5.19 -323.21 -1.68 -41.81 14 10 C 0.18 7.87 3.54 44.93 0.16 8.02 14 11 H 0.05 2.03 8.11 -2.39 -0.02 2.02 14 12 C -0.19 -7.61 10.40 26.26 0.27 -7.34 14 13 C -0.17 -5.06 10.77 26.26 0.28 -4.78 14 14 C -0.09 -2.28 6.81 30.53 0.21 -2.07 14 15 C -0.13 -4.27 6.87 31.71 0.22 -4.05 14 16 H 0.24 15.71 6.77 -92.71 -0.63 15.08 14 17 H 0.36 20.03 6.41 -92.71 -0.59 19.44 14 18 H 0.10 4.03 8.06 -2.91 -0.02 4.01 14 19 H 0.14 3.47 8.06 -2.91 -0.02 3.44 14 20 H 0.09 1.93 8.14 -2.38 -0.02 1.91 14 21 H 0.09 2.07 8.14 -2.39 -0.02 2.05 14 22 H 0.08 2.47 8.14 -2.39 -0.02 2.45 14 23 H 0.06 2.12 7.80 -2.39 -0.02 2.10 14 Total: -1.00 -67.95 201.45 3.85 -64.10 By element: Atomic # 1 Polarization: 19.27 SS G_CDS: 0.73 Total: 20.00 kcal Atomic # 6 Polarization: -37.46 SS G_CDS: 2.45 Total: -35.02 kcal Atomic # 7 Polarization: -103.17 SS G_CDS: -1.38 Total: -104.56 kcal Atomic # 14 Polarization: 53.42 SS G_CDS: 2.05 Total: 55.48 kcal Total: -67.95 3.85 -64.10 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000196755425.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.300 kcal (2) G-P(sol) polarization free energy of solvation -67.945 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.354 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.849 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.096 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.204 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.10 seconds