Wall clock time and date at job start Mon Mar 30 2020 02:00:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86794 * 120.00034 * 2 1 4 4 H 1.48498 * 109.47176 * 270.00364 * 3 2 1 5 5 H 1.48498 * 109.47481 * 30.00443 * 3 2 1 6 6 H 1.48501 * 109.46931 * 150.00491 * 3 2 1 7 7 C 1.38815 * 119.99480 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00267 * 359.97438 * 7 2 1 9 9 N 1.36938 * 119.99408 * 179.97438 * 7 2 1 10 10 C 1.46506 * 119.99589 * 179.97438 * 9 7 2 11 11 H 1.08994 * 110.34536 * 327.28910 * 10 9 7 12 12 C 1.51101 * 110.38442 * 89.70189 * 10 9 7 13 13 C 1.30526 * 111.10716 * 135.24994 * 12 10 9 14 14 C 1.51102 * 111.10272 * 359.97438 * 13 12 10 15 15 C 1.54635 * 104.72488 * 343.56501 * 14 13 12 16 16 H 0.97000 * 120.00111 * 359.97438 * 1 2 3 17 17 H 0.96995 * 120.00302 * 0.27434 * 9 7 2 18 18 H 1.08004 * 124.44328 * 315.22291 * 12 10 9 19 19 H 1.07996 * 124.44947 * 179.97438 * 13 12 10 20 20 H 1.08995 * 110.38908 * 224.75474 * 14 13 12 21 21 H 1.08993 * 110.38650 * 102.37505 * 14 13 12 22 22 H 1.08995 * 111.04013 * 266.60064 * 15 14 13 23 23 H 1.09005 * 111.07237 * 142.67912 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4976 2.0464 -1.4001 5 1 1.4477 2.6526 0.7001 6 1 3.5478 1.4400 0.6999 7 6 2.0102 -1.2022 -0.0005 8 1 1.4701 -2.1375 -0.0005 9 7 3.3795 -1.2022 -0.0011 10 6 4.1120 -2.4710 -0.0011 11 1 3.5570 -3.2290 0.5516 12 6 4.3682 -2.9309 -1.4174 13 6 5.5971 -3.3465 -1.5617 14 6 6.3655 -3.2326 -0.2656 15 6 5.5195 -2.2799 0.6106 16 1 -0.4850 0.8400 0.0004 17 1 3.8645 -0.3622 0.0030 18 1 3.6311 -2.9177 -2.2067 19 1 6.0103 -3.7224 -2.4859 20 1 7.3526 -2.8068 -0.4456 21 1 6.4534 -4.2090 0.2107 22 1 5.8558 -1.2486 0.5045 23 1 5.5370 -2.5893 1.6556 RHF calculation, no. of doubly occupied orbitals= 28 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000196755437.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:00:20 Heat of formation + Delta-G solvation = 28.935294 kcal Electronic energy + Delta-G solvation = -7994.589643 eV Core-core repulsion = 6422.419311 eV Total energy + Delta-G solvation = -1572.170332 eV No. of doubly occupied orbitals = 28 Molecular weight (most abundant/longest-lived isotopes) = 153.085 amu Computer time = 0.09 seconds Orbital eigenvalues (eV) -38.12916 -33.69248 -30.92371 -28.45735 -26.42109 -22.55942 -20.29140 -18.05409 -17.58165 -15.47124 -15.06924 -14.10642 -12.98330 -12.71704 -12.03851 -11.64469 -11.37923 -11.09534 -10.82319 -10.77757 -10.34938 -10.15667 -9.56798 -8.93544 -8.41547 -7.26437 -5.75987 -3.11082 2.84316 3.39160 3.42521 3.46529 4.60567 5.16569 5.21163 5.39952 5.58516 5.72429 5.90169 6.04153 6.16450 6.26373 6.39003 6.64469 6.83159 7.07179 7.45255 8.02059 8.43567 9.22206 9.94881 10.15385 11.42425 Molecular weight = 153.08amu Principal moments of inertia in cm(-1) A = 0.089956 B = 0.016702 C = 0.015487 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 311.188886 B = 1676.069139 C = 1807.585741 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C 0.004 3.996 3 Si 0.885 3.115 4 H -0.284 1.284 5 H -0.291 1.291 6 H -0.277 1.277 7 C -0.246 4.246 8 H 0.091 0.909 9 N -0.744 5.744 10 C 0.194 3.806 11 H 0.069 0.931 12 C -0.146 4.146 13 C -0.207 4.207 14 C -0.092 4.092 15 C -0.133 4.133 16 H 0.259 0.741 17 H 0.362 0.638 18 H 0.118 0.882 19 H 0.111 0.889 20 H 0.059 0.941 21 H 0.067 0.933 22 H 0.067 0.933 23 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.999 -3.919 -0.520 11.688 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.192 4.192 3 Si 0.715 3.285 4 H -0.211 1.211 5 H -0.217 1.217 6 H -0.203 1.203 7 C -0.376 4.376 8 H 0.109 0.891 9 N -0.385 5.385 10 C 0.085 3.915 11 H 0.086 0.914 12 C -0.167 4.167 13 C -0.226 4.226 14 C -0.129 4.129 15 C -0.171 4.171 16 H 0.069 0.931 17 H 0.195 0.805 18 H 0.136 0.864 19 H 0.129 0.871 20 H 0.078 0.922 21 H 0.085 0.915 22 H 0.086 0.914 23 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 10.725 -3.962 -0.486 11.443 hybrid contribution 0.484 1.223 -0.188 1.329 sum 11.209 -2.738 -0.673 11.558 Atomic orbital electron populations 1.69706 1.05110 1.25826 1.57581 1.24676 0.95241 0.97224 1.02023 0.86536 0.79210 0.84931 0.77806 1.21074 1.21710 1.20319 1.19148 0.80699 0.94789 1.42919 0.89144 1.42825 1.04013 1.01858 1.89835 1.20172 0.90950 0.89295 0.91094 0.91365 1.24369 0.96532 0.95167 1.00656 1.23034 0.96664 1.05171 0.97765 1.21222 0.98272 0.99134 0.94301 1.22789 0.95965 0.99450 0.98946 0.93066 0.80496 0.86431 0.87068 0.92248 0.91479 0.91441 0.91254 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -29.72 13.97 55.49 0.78 -28.95 14 2 C 0.00 0.12 5.50 -17.43 -0.10 0.02 14 3 Si 0.88 22.51 27.74 -169.99 -4.72 17.80 14 4 H -0.28 -7.19 7.11 56.52 0.40 -6.79 14 5 H -0.29 -7.45 7.11 56.52 0.40 -7.05 14 6 H -0.28 -6.65 6.52 56.52 0.37 -6.28 14 7 C -0.25 -7.09 10.44 -15.06 -0.16 -7.25 14 8 H 0.09 2.78 8.06 -52.49 -0.42 2.35 14 9 N -0.74 -18.29 4.98 -53.51 -0.27 -18.56 14 10 C 0.19 3.96 3.55 -68.02 -0.24 3.71 14 11 H 0.07 1.43 8.09 -51.93 -0.42 1.01 14 12 C -0.15 -2.75 10.41 -35.70 -0.37 -3.12 14 13 C -0.21 -3.28 10.78 -35.70 -0.38 -3.67 14 14 C -0.09 -1.31 6.81 -26.83 -0.18 -1.50 14 15 C -0.13 -2.21 6.88 -25.00 -0.17 -2.38 14 16 H 0.26 7.84 8.31 -40.82 -0.34 7.50 14 17 H 0.36 8.75 5.47 -40.82 -0.22 8.52 14 18 H 0.12 2.30 8.06 -52.48 -0.42 1.88 14 19 H 0.11 1.53 8.06 -52.49 -0.42 1.11 14 20 H 0.06 0.76 8.14 -51.93 -0.42 0.33 14 21 H 0.07 0.86 8.14 -51.93 -0.42 0.44 14 22 H 0.07 1.13 7.81 -51.93 -0.41 0.73 14 23 H 0.07 1.05 8.14 -51.93 -0.42 0.63 14 LS Contribution 200.05 15.07 3.01 3.01 Total: -1.00 -30.94 200.05 -5.55 -36.49 By element: Atomic # 1 Polarization: 7.13 SS G_CDS: -2.75 Total: 4.38 kcal Atomic # 6 Polarization: -12.57 SS G_CDS: -1.61 Total: -14.17 kcal Atomic # 7 Polarization: -48.01 SS G_CDS: 0.51 Total: -47.50 kcal Atomic # 14 Polarization: 22.51 SS G_CDS: -4.72 Total: 17.80 kcal Total LS contribution 3.01 Total: 3.01 kcal Total: -30.94 -5.55 -36.49 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000196755437.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.422 kcal (2) G-P(sol) polarization free energy of solvation -30.936 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.486 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.551 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.487 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.935 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.09 seconds