Wall clock time and date at job start Mon Mar 30 2020 01:54:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.35036 * 128.36167 * 2 1 4 4 O 1.34052 * 107.15055 * 180.22819 * 3 2 1 5 5 N 1.20762 * 113.17914 * 359.74495 * 4 3 2 6 6 C 1.32219 * 111.32665 * 0.02562 * 5 4 3 7 7 C 1.41735 * 127.46515 * 179.97438 * 6 5 4 8 8 H 1.08005 * 119.99508 * 188.81792 * 7 6 5 9 9 C 1.39978 * 120.00285 * 8.82513 * 7 6 5 10 10 N 1.30746 * 120.00048 * 19.15645 * 9 7 6 11 11 Si 1.86807 * 120.00004 * 198.87771 * 9 7 6 12 12 H 1.48497 * 109.47030 * 0.02562 * 11 9 7 13 13 H 1.48494 * 109.47053 * 120.00059 * 11 9 7 14 14 H 1.48502 * 109.47140 * 239.99998 * 11 9 7 15 15 H 1.08999 * 109.47192 * 270.16300 * 1 2 3 16 16 H 1.09001 * 109.47084 * 30.16257 * 1 2 3 17 17 H 1.08997 * 109.47169 * 150.15967 * 1 2 3 18 18 H 1.07997 * 126.42095 * 359.93277 * 3 2 1 19 19 H 0.97000 * 120.00270 * 5.45217 * 10 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3450 1.0588 0.0000 4 8 3.5947 0.5738 -0.0051 5 7 3.6362 -0.6331 -0.0033 6 6 2.4218 -1.1559 0.0028 7 6 2.0749 -2.5302 0.0061 8 1 1.0458 -2.8276 -0.1324 9 6 3.0658 -3.5018 0.1888 10 7 4.2144 -3.1724 0.7194 11 14 2.7441 -5.2708 -0.3181 12 1 1.3755 -5.3826 -0.8834 13 1 3.7375 -5.6804 -1.3430 14 1 2.8638 -6.1554 0.8687 15 1 -0.3633 0.0029 1.0276 16 1 -0.3633 0.8885 -0.5164 17 1 -0.3633 -0.8914 -0.5113 18 1 2.0616 2.1009 -0.0010 19 1 4.3522 -2.2742 1.0587 RHF calculation, no. of doubly occupied orbitals= 27 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000203795970.mol2 19 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:54:16 Heat of formation + Delta-G solvation = 32.243015 kcal Electronic energy + Delta-G solvation = -7940.082472 eV Core-core repulsion = 6232.222479 eV Total energy + Delta-G solvation = -1707.859993 eV No. of doubly occupied orbitals = 27 Molecular weight (most abundant/longest-lived isotopes) = 153.053 amu Computer time = 0.07 seconds Orbital eigenvalues (eV) -42.54002 -34.27837 -32.51357 -29.85293 -26.96310 -25.66850 -20.81555 -19.68306 -17.87253 -15.63282 -15.35504 -13.99839 -13.91660 -12.71286 -12.45220 -11.76941 -11.65227 -11.10491 -11.02893 -10.31458 -9.78757 -9.38149 -9.15948 -8.13977 -7.98109 -6.94463 -4.49119 3.01982 3.21802 3.25487 3.43648 4.01868 4.17539 4.82244 5.29277 5.81345 6.03949 6.31356 6.33725 6.48021 6.77329 7.09823 7.33799 8.02756 8.08578 8.69145 8.97921 10.34698 10.50452 Molecular weight = 153.05amu Principal moments of inertia in cm(-1) A = 0.082861 B = 0.021024 C = 0.017245 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 337.832629 B = 1331.510373 C = 1623.285504 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.053 4.053 2 C -0.268 4.268 3 C -0.091 4.091 4 O 0.027 5.973 5 N -0.476 5.476 6 C 0.162 3.838 7 C -0.508 4.508 8 H 0.080 0.920 9 C 0.034 3.966 10 N -0.799 5.799 11 Si 1.079 2.921 12 H -0.279 1.279 13 H -0.277 1.277 14 H -0.280 1.280 15 H 0.052 0.948 16 H 0.048 0.952 17 H 0.060 0.940 18 H 0.182 0.818 19 H 0.308 0.692 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.345 2.039 -0.985 5.805 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.273 4.273 3 C -0.172 4.172 4 O -0.015 6.015 5 N -0.213 5.213 6 C 0.018 3.982 7 C -0.547 4.547 8 H 0.098 0.902 9 C -0.189 4.189 10 N -0.428 5.428 11 Si 0.903 3.097 12 H -0.204 1.204 13 H -0.203 1.203 14 H -0.205 1.205 15 H 0.071 0.929 16 H 0.067 0.933 17 H 0.079 0.921 18 H 0.199 0.801 19 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -3.389 0.297 -1.082 3.570 hybrid contribution -1.652 1.817 0.134 2.459 sum -5.041 2.114 -0.947 5.548 Atomic orbital electron populations 1.19735 0.89915 1.00920 1.00496 1.22285 0.96628 0.93235 1.15130 1.24968 0.86407 0.98944 1.06854 1.84449 1.27029 1.18045 1.71965 1.74382 1.20693 0.88493 1.37692 1.21785 0.86212 0.94913 0.95284 1.19724 0.97722 0.88035 1.49189 0.90202 1.26879 0.92230 1.06552 0.93238 1.70182 1.23450 1.26488 1.22684 0.83458 0.76368 0.72657 0.77210 1.20387 1.20252 1.20536 0.92941 0.93298 0.92082 0.80123 0.87652 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.05 -1.02 10.45 36.00 0.38 -0.65 13 2 C -0.27 -6.51 6.55 -102.03 -0.67 -7.18 13 3 C -0.09 -2.02 12.21 29.59 0.36 -1.66 13 4 O 0.03 0.70 11.09 17.19 0.19 0.89 13 5 N -0.48 -14.14 9.76 33.33 0.33 -13.82 13 6 C 0.16 4.71 6.76 -82.63 -0.56 4.16 13 7 C -0.51 -14.68 9.40 -37.60 -0.35 -15.03 13 8 H 0.08 2.17 7.91 -52.48 -0.42 1.75 13 9 C 0.03 0.96 5.42 -17.36 -0.09 0.86 13 10 N -0.80 -24.15 13.34 55.55 0.74 -23.41 13 11 Si 1.08 23.43 29.97 -169.99 -5.10 18.34 13 12 H -0.28 -5.65 7.11 56.52 0.40 -5.25 13 13 H -0.28 -5.92 7.11 56.52 0.40 -5.52 13 14 H -0.28 -5.82 7.11 56.52 0.40 -5.42 13 15 H 0.05 0.93 8.14 -51.93 -0.42 0.51 13 16 H 0.05 0.78 8.14 -51.93 -0.42 0.36 13 17 H 0.06 1.17 8.14 -51.93 -0.42 0.75 13 18 H 0.18 3.01 8.06 -52.49 -0.42 2.59 13 19 H 0.31 9.69 6.24 -40.82 -0.25 9.44 13 LS Contribution 182.91 15.07 2.76 2.76 Total: -1.00 -32.35 182.91 -3.18 -35.53 By element: Atomic # 1 Polarization: 0.37 SS G_CDS: -1.16 Total: -0.78 kcal Atomic # 6 Polarization: -18.56 SS G_CDS: -0.94 Total: -19.50 kcal Atomic # 7 Polarization: -38.30 SS G_CDS: 1.07 Total: -37.23 kcal Atomic # 8 Polarization: 0.70 SS G_CDS: 0.19 Total: 0.89 kcal Atomic # 14 Polarization: 23.43 SS G_CDS: -5.10 Total: 18.34 kcal Total LS contribution 2.76 Total: 2.76 kcal Total: -32.35 -3.18 -35.53 kcal The number of atoms in the molecule is 19 The average number of expansion shells was 13.00 The maximum number of expansion shells was 13 The minimum number of expansion shells was 13 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000203795970.mol2 19 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.770 kcal (2) G-P(sol) polarization free energy of solvation -32.351 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.418 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.175 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.527 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.243 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.07 seconds