Wall clock time and date at job start Mon Mar 30 2020 01:54:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.35036 * 128.36167 * 2 1 4 4 O 1.34052 * 107.15055 * 180.22819 * 3 2 1 5 5 N 1.20762 * 113.17914 * 359.74495 * 4 3 2 6 6 C 1.32219 * 111.32665 * 0.02562 * 5 4 3 7 7 C 1.41735 * 127.46515 * 179.97438 * 6 5 4 8 8 H 1.08005 * 119.99508 * 188.81792 * 7 6 5 9 9 C 1.39978 * 120.00285 * 8.82513 * 7 6 5 10 10 N 1.30746 * 120.00048 * 19.15645 * 9 7 6 11 11 Si 1.86807 * 120.00004 * 198.87771 * 9 7 6 12 12 H 1.48497 * 109.47030 * 0.02562 * 11 9 7 13 13 H 1.48494 * 109.47053 * 120.00059 * 11 9 7 14 14 H 1.48502 * 109.47140 * 239.99998 * 11 9 7 15 15 H 1.08999 * 109.47192 * 270.16300 * 1 2 3 16 16 H 1.09001 * 109.47084 * 30.16257 * 1 2 3 17 17 H 1.08997 * 109.47169 * 150.15967 * 1 2 3 18 18 H 1.07997 * 126.42095 * 359.93277 * 3 2 1 19 19 H 0.97000 * 120.00270 * 5.45217 * 10 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3450 1.0588 0.0000 4 8 3.5947 0.5738 -0.0051 5 7 3.6362 -0.6331 -0.0033 6 6 2.4218 -1.1559 0.0028 7 6 2.0749 -2.5302 0.0061 8 1 1.0458 -2.8276 -0.1324 9 6 3.0658 -3.5018 0.1888 10 7 4.2144 -3.1724 0.7194 11 14 2.7441 -5.2708 -0.3181 12 1 1.3755 -5.3826 -0.8834 13 1 3.7375 -5.6804 -1.3430 14 1 2.8638 -6.1554 0.8687 15 1 -0.3633 0.0029 1.0276 16 1 -0.3633 0.8885 -0.5164 17 1 -0.3633 -0.8914 -0.5113 18 1 2.0616 2.1009 -0.0010 19 1 4.3522 -2.2742 1.0587 RHF calculation, no. of doubly occupied orbitals= 27 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000203795970.mol2 19 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:54:16 Heat of formation + Delta-G solvation = 10.124028 kcal Electronic energy + Delta-G solvation = -7941.041623 eV Core-core repulsion = 6232.222479 eV Total energy + Delta-G solvation = -1708.819144 eV No. of doubly occupied orbitals = 27 Molecular weight (most abundant/longest-lived isotopes) = 153.053 amu Computer time = 0.07 seconds Orbital eigenvalues (eV) -44.60724 -36.35380 -34.39058 -31.93204 -28.73152 -27.75158 -22.89261 -21.59464 -19.88818 -17.70562 -17.36427 -15.92333 -15.75740 -14.45257 -13.95507 -13.75003 -13.48785 -12.90840 -12.78094 -11.95127 -11.72536 -11.42988 -11.16578 -10.26716 -9.85778 -9.13741 -6.69245 1.17404 1.43731 1.50065 1.79662 2.02139 2.37500 3.11367 3.15973 4.07723 4.39041 4.47795 4.85403 4.87738 5.03834 5.23236 5.58310 5.84896 5.90782 6.52146 6.86499 8.16410 8.45233 Molecular weight = 153.05amu Principal moments of inertia in cm(-1) A = 0.082861 B = 0.021024 C = 0.017245 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 337.832629 B = 1331.510373 C = 1623.285504 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.049 4.049 2 C -0.285 4.285 3 C -0.074 4.074 4 O 0.014 5.986 5 N -0.512 5.512 6 C 0.118 3.882 7 C -0.539 4.539 8 H 0.089 0.911 9 C -0.011 4.011 10 N -0.832 5.832 11 Si 1.135 2.865 12 H -0.254 1.254 13 H -0.273 1.273 14 H -0.265 1.265 15 H 0.065 0.935 16 H 0.088 0.912 17 H 0.053 0.947 18 H 0.244 0.756 19 H 0.288 0.712 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.923 2.393 -1.421 7.462 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.289 4.289 3 C -0.153 4.153 4 O -0.028 6.028 5 N -0.248 5.248 6 C -0.027 4.027 7 C -0.577 4.577 8 H 0.107 0.893 9 C -0.226 4.226 10 N -0.461 5.461 11 Si 0.950 3.050 12 H -0.178 1.178 13 H -0.198 1.198 14 H -0.190 1.190 15 H 0.084 0.916 16 H 0.106 0.894 17 H 0.072 0.928 18 H 0.260 0.740 19 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -4.984 0.683 -1.512 5.253 hybrid contribution -1.199 1.895 0.274 2.259 sum -6.183 2.578 -1.238 6.812 Atomic orbital electron populations 1.19843 0.86388 1.02547 1.01846 1.22915 0.99125 0.91809 1.15097 1.25987 0.84225 1.01287 1.03810 1.84361 1.29245 1.16934 1.72257 1.74391 1.22074 0.90042 1.38305 1.22478 0.87617 0.96683 0.95903 1.20111 0.98515 0.88820 1.50207 0.89316 1.28683 0.91222 1.11111 0.91571 1.70322 1.25042 1.25330 1.25446 0.82820 0.77502 0.67117 0.77511 1.17799 1.19802 1.18959 0.91634 0.89351 0.92762 0.74002 0.89870 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.05 -1.73 10.45 71.24 0.74 -0.99 13 2 C -0.29 -13.32 6.55 -18.18 -0.12 -13.44 13 3 C -0.07 -3.08 12.21 67.08 0.82 -2.26 13 4 O 0.01 0.72 11.09 71.72 0.80 1.51 13 5 N -0.51 -30.93 9.76 -48.88 -0.48 -31.41 13 6 C 0.12 6.93 6.76 42.37 0.29 7.21 13 7 C -0.54 -31.42 9.40 23.56 0.22 -31.20 13 8 H 0.09 4.81 7.91 -2.91 -0.02 4.79 13 9 C -0.01 -0.60 5.42 85.28 0.46 -0.13 13 10 N -0.83 -51.68 13.34 21.83 0.29 -51.39 13 11 Si 1.13 46.68 29.97 68.60 2.06 48.74 13 12 H -0.25 -9.34 7.11 99.48 0.71 -8.64 13 13 H -0.27 -10.96 7.11 99.48 0.71 -10.26 13 14 H -0.26 -10.19 7.11 99.48 0.71 -9.48 13 15 H 0.06 2.13 8.14 -2.39 -0.02 2.11 13 16 H 0.09 2.40 8.14 -2.39 -0.02 2.38 13 17 H 0.05 1.96 8.14 -2.39 -0.02 1.94 13 18 H 0.24 6.76 8.06 -2.91 -0.02 6.73 13 19 H 0.29 18.86 6.24 -92.71 -0.58 18.28 13 Total: -1.00 -72.01 182.91 6.52 -65.49 By element: Atomic # 1 Polarization: 6.42 SS G_CDS: 1.44 Total: 7.86 kcal Atomic # 6 Polarization: -43.23 SS G_CDS: 2.42 Total: -40.81 kcal Atomic # 7 Polarization: -82.61 SS G_CDS: -0.19 Total: -82.80 kcal Atomic # 8 Polarization: 0.72 SS G_CDS: 0.80 Total: 1.51 kcal Atomic # 14 Polarization: 46.68 SS G_CDS: 2.06 Total: 48.74 kcal Total: -72.01 6.52 -65.49 kcal The number of atoms in the molecule is 19 The average number of expansion shells was 13.00 The maximum number of expansion shells was 13 The minimum number of expansion shells was 13 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000203795970.mol2 19 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.617 kcal (2) G-P(sol) polarization free energy of solvation -72.011 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.606 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.518 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.493 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.124 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.08 seconds