Wall clock time and date at job start Mon Mar 30 2020 01:56:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 N 1.28651 * 126.06301 * 2 1 4 4 N 1.28395 * 111.33379 * 179.71084 * 3 2 1 5 5 C 1.33053 * 109.78941 * 0.42608 * 4 3 2 6 6 C 1.37721 * 126.06050 * 179.97438 * 2 1 3 7 7 C 1.40375 * 127.47537 * 0.03608 * 6 2 1 8 8 H 1.07998 * 119.99722 * 0.02562 * 7 6 2 9 9 C 1.40145 * 119.99871 * 180.02562 * 7 6 2 10 10 N 1.30760 * 120.00156 * 359.97438 * 9 7 6 11 11 Si 1.86802 * 119.99956 * 179.97438 * 9 7 6 12 12 H 1.48510 * 109.47012 * 359.97438 * 11 9 7 13 13 H 1.48500 * 109.47273 * 119.99139 * 11 9 7 14 14 H 1.48497 * 109.47223 * 239.99889 * 11 9 7 15 15 H 1.09004 * 109.46953 * 270.03890 * 1 2 3 16 16 H 1.09002 * 109.47314 * 30.03910 * 1 2 3 17 17 H 1.09000 * 109.47757 * 150.04480 * 1 2 3 18 18 H 1.08002 * 127.02894 * 179.86371 * 5 4 3 19 19 H 0.96998 * 120.00369 * 180.02562 * 10 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2223 1.0400 0.0000 4 7 3.4641 0.7135 0.0060 5 6 3.5815 -0.6118 0.0011 6 6 2.2757 -1.1133 0.0005 7 6 1.8778 -2.4595 0.0004 8 1 0.8278 -2.7122 -0.0005 9 6 2.8432 -3.4755 0.0015 10 7 4.1145 -3.1694 0.0021 11 14 2.3138 -5.2669 0.0021 12 1 0.8307 -5.3448 0.0019 13 1 2.8454 -5.9406 -1.2098 14 1 2.8441 -5.9394 1.2152 15 1 -0.3633 0.0007 1.0277 16 1 -0.3634 0.8896 -0.5144 17 1 -0.3634 -0.8903 -0.5131 18 1 4.4977 -1.1836 0.0021 19 1 4.7826 -3.8726 0.0025 RHF calculation, no. of doubly occupied orbitals= 27 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000211615161.mol2 19 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:56:27 Heat of formation + Delta-G solvation = 77.459323 kcal Electronic energy + Delta-G solvation = -7955.277957 eV Core-core repulsion = 6281.671441 eV Total energy + Delta-G solvation = -1673.606515 eV No. of doubly occupied orbitals = 27 Molecular weight (most abundant/longest-lived isotopes) = 153.060 amu Computer time = 0.06 seconds Orbital eigenvalues (eV) -40.73984 -33.94429 -32.88708 -29.34130 -26.63054 -25.33146 -20.72796 -19.71561 -17.34291 -15.71227 -14.73478 -14.56546 -13.29507 -12.77488 -12.09507 -11.91748 -11.56096 -11.39803 -10.86847 -10.59403 -9.64892 -9.47939 -8.93202 -8.40746 -7.49548 -6.83126 -4.55011 2.84332 3.00743 3.05761 3.47312 3.79359 4.17695 4.45095 5.14031 5.63948 5.92264 6.05898 6.72214 6.92315 7.35834 7.61338 7.64298 8.23480 8.50608 8.70545 8.84678 10.14220 10.59133 Molecular weight = 153.06amu Principal moments of inertia in cm(-1) A = 0.086302 B = 0.021412 C = 0.017317 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 324.364532 B = 1307.343589 C = 1616.563238 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.115 3.885 2 N -0.375 5.375 3 N -0.206 5.206 4 N -0.286 5.286 5 C -0.150 4.150 6 C 0.170 3.830 7 C -0.440 4.440 8 H 0.079 0.921 9 C 0.075 3.925 10 N -0.793 5.793 11 Si 0.931 3.069 12 H -0.262 1.262 13 H -0.272 1.272 14 H -0.272 1.272 15 H 0.059 0.941 16 H 0.073 0.927 17 H 0.078 0.922 18 H 0.194 0.806 19 H 0.283 0.717 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.962 -4.099 -0.087 6.437 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.029 4.029 2 N -0.173 5.173 3 N -0.181 5.181 4 N -0.151 5.151 5 C -0.312 4.312 6 C 0.046 3.954 7 C -0.478 4.478 8 H 0.097 0.903 9 C -0.144 4.144 10 N -0.421 5.421 11 Si 0.755 3.245 12 H -0.186 1.186 13 H -0.197 1.197 14 H -0.197 1.197 15 H 0.077 0.923 16 H 0.092 0.908 17 H 0.097 0.903 18 H 0.211 0.789 19 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -4.759 -2.536 -0.084 5.393 hybrid contribution -0.413 -2.107 0.019 2.147 sum -5.173 -4.643 -0.065 6.951 Atomic orbital electron populations 1.21469 0.76600 1.02909 1.01904 1.46937 1.06524 1.05325 1.58467 1.77495 0.96700 1.12463 1.31476 1.74019 1.09791 1.16044 1.15238 1.24420 0.98227 0.88916 1.19648 1.19966 0.89448 0.88207 0.97801 1.18547 0.94597 0.87755 1.46865 0.90292 1.25759 0.94224 1.01932 0.92520 1.69572 1.01307 1.35428 1.35778 0.85897 0.79789 0.80173 0.78660 1.18587 1.19697 1.19700 0.92266 0.90841 0.90343 0.78915 0.90560 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 2.17 11.23 59.85 0.67 2.84 13 2 N -0.38 -9.70 3.81 -65.25 -0.25 -9.95 13 3 N -0.21 -5.77 13.09 60.35 0.79 -4.98 13 4 N -0.29 -8.38 12.31 31.01 0.38 -8.00 13 5 C -0.15 -4.37 11.04 -16.41 -0.18 -4.55 13 6 C 0.17 4.73 6.81 -83.80 -0.57 4.16 13 7 C -0.44 -11.41 9.06 -38.06 -0.34 -11.75 13 8 H 0.08 1.88 7.30 -52.49 -0.38 1.50 13 9 C 0.07 1.83 5.50 -17.29 -0.10 1.74 13 10 N -0.79 -20.15 10.42 55.56 0.58 -19.57 13 11 Si 0.93 17.98 29.56 -169.99 -5.03 12.96 13 12 H -0.26 -4.94 7.11 56.52 0.40 -4.54 13 13 H -0.27 -5.17 7.11 56.52 0.40 -4.77 13 14 H -0.27 -5.17 7.11 56.52 0.40 -4.77 13 15 H 0.06 1.00 8.14 -51.93 -0.42 0.58 13 16 H 0.07 1.21 8.14 -51.93 -0.42 0.79 13 17 H 0.08 1.35 7.48 -51.93 -0.39 0.96 13 18 H 0.19 5.60 5.92 -52.49 -0.31 5.29 13 19 H 0.28 6.43 8.29 -40.82 -0.34 6.09 13 LS Contribution 179.42 15.07 2.70 2.70 Total: -1.00 -30.86 179.42 -2.40 -33.26 By element: Atomic # 1 Polarization: 2.19 SS G_CDS: -1.06 Total: 1.13 kcal Atomic # 6 Polarization: -7.05 SS G_CDS: -0.52 Total: -7.57 kcal Atomic # 7 Polarization: -43.99 SS G_CDS: 1.50 Total: -42.49 kcal Atomic # 14 Polarization: 17.98 SS G_CDS: -5.03 Total: 12.96 kcal Total LS contribution 2.70 Total: 2.70 kcal Total: -30.86 -2.40 -33.26 kcal The number of atoms in the molecule is 19 The average number of expansion shells was 13.00 The maximum number of expansion shells was 13 The minimum number of expansion shells was 13 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000211615161.mol2 19 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.724 kcal (2) G-P(sol) polarization free energy of solvation -30.864 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.859 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.400 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.264 kcal (6) G-S(sol) free energy of system = (1) + (5) 77.459 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.06 seconds