Wall clock time and date at job start Mon Mar 30 2020 01:56:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 N 1.28651 * 126.06301 * 2 1 4 4 N 1.28395 * 111.33379 * 179.71084 * 3 2 1 5 5 C 1.33053 * 109.78941 * 0.42608 * 4 3 2 6 6 C 1.37721 * 126.06050 * 179.97438 * 2 1 3 7 7 C 1.40375 * 127.47537 * 0.03608 * 6 2 1 8 8 H 1.07998 * 119.99722 * 0.02562 * 7 6 2 9 9 C 1.40145 * 119.99871 * 180.02562 * 7 6 2 10 10 N 1.30760 * 120.00156 * 359.97438 * 9 7 6 11 11 Si 1.86802 * 119.99956 * 179.97438 * 9 7 6 12 12 H 1.48510 * 109.47012 * 359.97438 * 11 9 7 13 13 H 1.48500 * 109.47273 * 119.99139 * 11 9 7 14 14 H 1.48497 * 109.47223 * 239.99889 * 11 9 7 15 15 H 1.09004 * 109.46953 * 270.03890 * 1 2 3 16 16 H 1.09002 * 109.47314 * 30.03910 * 1 2 3 17 17 H 1.09000 * 109.47757 * 150.04480 * 1 2 3 18 18 H 1.08002 * 127.02894 * 179.86371 * 5 4 3 19 19 H 0.96998 * 120.00369 * 180.02562 * 10 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2223 1.0400 0.0000 4 7 3.4641 0.7135 0.0060 5 6 3.5815 -0.6118 0.0011 6 6 2.2757 -1.1133 0.0005 7 6 1.8778 -2.4595 0.0004 8 1 0.8278 -2.7122 -0.0005 9 6 2.8432 -3.4755 0.0015 10 7 4.1145 -3.1694 0.0021 11 14 2.3138 -5.2669 0.0021 12 1 0.8307 -5.3448 0.0019 13 1 2.8454 -5.9406 -1.2098 14 1 2.8441 -5.9394 1.2152 15 1 -0.3633 0.0007 1.0277 16 1 -0.3634 0.8896 -0.5144 17 1 -0.3634 -0.8903 -0.5131 18 1 4.4977 -1.1836 0.0021 19 1 4.7826 -3.8726 0.0025 RHF calculation, no. of doubly occupied orbitals= 27 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000211615161.mol2 19 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:56:27 Heat of formation + Delta-G solvation = 55.384132 kcal Electronic energy + Delta-G solvation = -7956.235209 eV Core-core repulsion = 6281.671441 eV Total energy + Delta-G solvation = -1674.563767 eV No. of doubly occupied orbitals = 27 Molecular weight (most abundant/longest-lived isotopes) = 153.060 amu Computer time = 0.06 seconds Orbital eigenvalues (eV) -42.79849 -35.87849 -34.80116 -31.38349 -28.42871 -27.29314 -22.80175 -21.69487 -19.29292 -17.63854 -16.65494 -16.32625 -15.12135 -14.61148 -13.76357 -13.69985 -13.30803 -12.98879 -12.77605 -12.12722 -11.51707 -11.44340 -11.05079 -10.40547 -9.58877 -8.69076 -6.57206 1.14923 1.45082 1.62813 1.68603 2.15997 2.33290 2.41920 3.16810 4.14589 4.49067 4.63630 4.69937 4.97709 5.36344 5.58095 5.61991 6.27453 6.36191 6.72550 6.88949 8.31287 8.46363 Molecular weight = 153.06amu Principal moments of inertia in cm(-1) A = 0.086302 B = 0.021412 C = 0.017317 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 324.364532 B = 1307.343589 C = 1616.563238 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.103 3.897 2 N -0.379 5.379 3 N -0.218 5.218 4 N -0.310 5.310 5 C -0.185 4.185 6 C 0.152 3.848 7 C -0.458 4.458 8 H 0.100 0.900 9 C 0.031 3.969 10 N -0.822 5.822 11 Si 1.014 2.986 12 H -0.249 1.249 13 H -0.265 1.265 14 H -0.266 1.266 15 H 0.080 0.920 16 H 0.096 0.904 17 H 0.097 0.903 18 H 0.185 0.815 19 H 0.295 0.705 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.443 -5.879 -0.087 8.723 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.038 4.038 2 N -0.177 5.177 3 N -0.193 5.193 4 N -0.176 5.176 5 C -0.347 4.347 6 C 0.028 3.972 7 C -0.495 4.495 8 H 0.118 0.882 9 C -0.186 4.186 10 N -0.449 5.449 11 Si 0.833 3.167 12 H -0.172 1.172 13 H -0.190 1.190 14 H -0.191 1.191 15 H 0.099 0.901 16 H 0.114 0.886 17 H 0.115 0.885 18 H 0.202 0.798 19 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -6.258 -4.277 -0.084 7.581 hybrid contribution 0.046 -1.573 0.020 1.573 sum -6.212 -5.850 -0.063 8.533 Atomic orbital electron populations 1.21943 0.72900 1.05027 1.03970 1.47334 1.08610 1.04078 1.57718 1.77324 0.96621 1.13521 1.31813 1.73932 1.10859 1.16395 1.16377 1.24470 0.99087 0.89141 1.22041 1.20358 0.89452 0.89596 0.97828 1.19051 0.96151 0.87328 1.46974 0.88226 1.26956 0.93846 1.06841 0.90978 1.69634 1.02794 1.37720 1.34734 0.84667 0.79972 0.73177 0.78857 1.17223 1.19015 1.19053 0.90145 0.88565 0.88490 0.79802 0.89406 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 3.62 11.23 127.77 1.43 5.06 13 2 N -0.38 -19.29 3.81 -360.34 -1.37 -20.66 13 3 N -0.22 -12.20 13.09 37.02 0.48 -11.72 13 4 N -0.31 -18.56 12.31 -55.82 -0.69 -19.25 13 5 C -0.18 -11.00 11.04 84.91 0.94 -10.07 13 6 C 0.15 8.43 6.81 39.14 0.27 8.70 13 7 C -0.46 -23.08 9.06 23.25 0.21 -22.87 13 8 H 0.10 4.47 7.30 -2.91 -0.02 4.45 13 9 C 0.03 1.45 5.50 85.32 0.47 1.92 13 10 N -0.82 -41.39 10.42 21.86 0.23 -41.16 13 11 Si 1.01 34.71 29.56 68.60 2.03 36.74 13 12 H -0.25 -7.98 7.11 99.48 0.71 -7.27 13 13 H -0.27 -8.79 7.11 99.48 0.71 -8.08 13 14 H -0.27 -8.82 7.11 99.48 0.71 -8.11 13 15 H 0.08 2.50 8.14 -2.38 -0.02 2.48 13 16 H 0.10 2.93 8.14 -2.39 -0.02 2.91 13 17 H 0.10 3.04 7.48 -2.39 -0.02 3.02 13 18 H 0.19 11.07 5.92 -2.91 -0.02 11.05 13 19 H 0.29 13.14 8.29 -92.71 -0.77 12.38 13 Total: -1.00 -65.74 179.42 5.25 -60.48 By element: Atomic # 1 Polarization: 11.57 SS G_CDS: 1.26 Total: 12.82 kcal Atomic # 6 Polarization: -20.58 SS G_CDS: 3.32 Total: -17.26 kcal Atomic # 7 Polarization: -91.44 SS G_CDS: -1.35 Total: -92.78 kcal Atomic # 14 Polarization: 34.71 SS G_CDS: 2.03 Total: 36.74 kcal Total: -65.74 5.25 -60.48 kcal The number of atoms in the molecule is 19 The average number of expansion shells was 13.00 The maximum number of expansion shells was 13 The minimum number of expansion shells was 13 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000211615161.mol2 19 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.868 kcal (2) G-P(sol) polarization free energy of solvation -65.738 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.130 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.254 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.483 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.384 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.06 seconds