Wall clock time and date at job start Mon Mar 30 2020 01:41:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30670 * 1 3 3 Si 1.86800 * 120.00092 * 2 1 4 4 H 1.48491 * 109.47113 * 359.97438 * 3 2 1 5 5 H 1.48501 * 109.47362 * 119.99711 * 3 2 1 6 6 H 1.48500 * 109.46727 * 239.99340 * 3 2 1 7 7 C 1.40095 * 120.00076 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99406 * 2.75503 * 7 2 1 9 9 C 1.41543 * 120.00126 * 182.75657 * 7 2 1 10 10 N 1.33743 * 119.73012 * 186.72126 * 9 7 2 11 11 C 1.32005 * 119.43584 * 179.76728 * 10 9 7 12 12 C 1.39204 * 118.93588 * 0.50218 * 11 10 9 13 13 N 1.32516 * 119.43682 * 359.74672 * 12 11 10 14 14 N 1.28755 * 120.52457 * 359.97438 * 13 12 11 15 15 H 0.97007 * 120.00310 * 174.85238 * 1 2 3 16 16 H 1.07997 * 120.53224 * 180.22710 * 11 10 9 17 17 H 1.07999 * 120.28642 * 179.72012 * 12 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2407 1.6177 0.0000 4 1 1.2758 2.7464 -0.0006 5 1 3.0944 1.6965 1.2125 6 1 3.0946 1.6962 -1.2124 7 6 2.0072 -1.2133 0.0005 8 1 1.4680 -2.1480 -0.0440 9 6 3.4214 -1.2139 0.0595 10 7 4.0903 -2.3641 -0.0759 11 6 5.4093 -2.3574 -0.0246 12 6 6.0692 -1.1490 0.1805 13 7 5.3630 -0.0358 0.3141 14 7 4.0771 -0.0660 0.2551 15 1 -0.4851 -0.8367 -0.0754 16 1 5.9674 -3.2754 -0.1354 17 1 7.1476 -1.1190 0.2307 RHF calculation, no. of doubly occupied orbitals= 26 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000213538286.mol2 17 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:41:58 Heat of formation + Delta-G solvation = 23.819532 kcal Electronic energy + Delta-G solvation = -7551.123196 eV Core-core repulsion = 5902.502163 eV Total energy + Delta-G solvation = -1648.621033 eV No. of doubly occupied orbitals = 26 Molecular weight (most abundant/longest-lived isotopes) = 151.044 amu Computer time = 0.07 seconds Orbital eigenvalues (eV) -41.83576 -36.27873 -35.24073 -33.34968 -28.66262 -26.11798 -24.09361 -20.97812 -18.93246 -17.46912 -16.74809 -16.09114 -15.75684 -14.88843 -14.29239 -13.16158 -12.93370 -12.58162 -12.43257 -11.90281 -11.30929 -10.90740 -10.73298 -9.70368 -9.53322 -7.26745 0.14652 0.35654 1.54900 1.61827 1.95092 2.36319 2.46647 3.31606 3.49891 3.69506 3.96414 4.48662 4.71507 5.15901 5.24043 5.69218 5.89230 6.14757 6.70900 7.71240 8.12422 Molecular weight = 151.04amu Principal moments of inertia in cm(-1) A = 0.088098 B = 0.027588 C = 0.021232 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 317.752211 B = 1014.705424 C = 1318.443663 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.794 5.794 2 C 0.027 3.973 3 Si 1.175 2.825 4 H -0.304 1.304 5 H -0.279 1.279 6 H -0.299 1.299 7 C -0.459 4.459 8 H 0.079 0.921 9 C 0.304 3.696 10 N -0.557 5.557 11 C 0.154 3.846 12 C -0.131 4.131 13 N -0.206 5.206 14 N -0.425 5.425 15 H 0.290 0.710 16 H 0.215 0.785 17 H 0.209 0.791 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.428 -1.669 -0.287 7.618 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.416 5.416 2 C -0.195 4.195 3 Si 1.005 2.995 4 H -0.235 1.235 5 H -0.206 1.206 6 H -0.227 1.227 7 C -0.497 4.497 8 H 0.097 0.903 9 C 0.067 3.933 10 N -0.280 5.280 11 C -0.029 4.029 12 C -0.306 4.306 13 N -0.053 5.053 14 N -0.284 5.284 15 H 0.102 0.898 16 H 0.232 0.768 17 H 0.225 0.775 Dipole moment (debyes) X Y Z Total from point charges 6.403 0.745 -0.105 6.447 hybrid contribution 0.366 -2.860 -0.180 2.889 sum 6.770 -2.114 -0.285 7.098 Atomic orbital electron populations 1.70610 1.07902 1.33423 1.29642 1.28392 0.95618 1.07082 0.88371 0.81640 0.70084 0.68496 0.79250 1.23530 1.20614 1.22709 1.20597 0.89104 0.96834 1.43146 0.90273 1.21369 0.96373 0.85931 0.89645 1.69350 1.10098 1.29427 1.19135 1.24667 0.90656 1.00645 0.86951 1.24955 1.03829 0.91256 1.10519 1.72924 1.00701 1.28362 1.03343 1.72573 1.02290 1.24716 1.28870 0.89824 0.76811 0.77464 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -42.66 13.64 21.85 0.30 -42.36 13 2 C 0.03 1.50 5.52 85.32 0.47 1.97 13 3 Si 1.17 58.31 25.57 68.60 1.75 60.06 13 4 H -0.30 -14.11 7.11 99.48 0.71 -13.40 13 5 H -0.28 -14.22 6.66 99.48 0.66 -13.56 13 6 H -0.30 -15.18 7.11 99.48 0.71 -14.48 13 7 C -0.46 -26.07 9.83 23.54 0.23 -25.84 13 8 H 0.08 4.56 8.05 -2.91 -0.02 4.54 13 9 C 0.30 16.68 7.27 135.00 0.98 17.66 13 10 N -0.56 -26.96 10.47 -193.45 -2.03 -28.98 13 11 C 0.15 5.61 11.32 84.90 0.96 6.57 13 12 C -0.13 -4.81 11.37 84.82 0.96 -3.84 13 13 N -0.21 -9.79 11.64 -56.55 -0.66 -10.45 13 14 N -0.42 -22.95 5.77 -56.32 -0.33 -23.27 13 15 H 0.29 14.92 8.72 -92.70 -0.81 14.11 13 16 H 0.22 5.04 8.06 -2.91 -0.02 5.01 13 17 H 0.21 5.17 8.06 -2.91 -0.02 5.15 13 Total: -1.00 -64.96 166.16 3.85 -61.11 By element: Atomic # 1 Polarization: -13.82 SS G_CDS: 1.20 Total: -12.63 kcal Atomic # 6 Polarization: -7.09 SS G_CDS: 3.61 Total: -3.48 kcal Atomic # 7 Polarization: -102.35 SS G_CDS: -2.71 Total: -105.06 kcal Atomic # 14 Polarization: 58.31 SS G_CDS: 1.75 Total: 60.06 kcal Total: -64.96 3.85 -61.11 kcal The number of atoms in the molecule is 17 The average number of expansion shells was 13.00 The maximum number of expansion shells was 13 The minimum number of expansion shells was 13 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000213538286.mol2 17 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.932 kcal (2) G-P(sol) polarization free energy of solvation -64.961 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.971 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.849 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.113 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.820 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.07 seconds