Wall clock time and date at job start Mon Mar 30 2020 01:44:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.39767 * 126.76613 * 2 1 4 4 C 1.35668 * 107.34403 * 179.83532 * 3 2 1 5 5 O 1.34237 * 109.22019 * 0.43662 * 4 3 2 6 6 C 1.35098 * 109.38431 * 359.72307 * 5 4 3 7 7 C 1.39750 * 126.20291 * 180.02562 * 6 5 4 8 8 H 1.07994 * 119.99601 * 174.13316 * 7 6 5 9 9 C 1.40160 * 119.99872 * 354.13306 * 7 6 5 10 10 N 1.30803 * 120.00499 * 6.01473 * 9 7 6 11 11 Si 1.86798 * 119.99735 * 186.01722 * 9 7 6 12 12 H 1.48498 * 109.47067 * 94.97959 * 11 9 7 13 13 H 1.48501 * 109.47105 * 214.97910 * 11 9 7 14 14 H 1.48501 * 109.47157 * 334.97973 * 11 9 7 15 15 H 1.09002 * 109.47436 * 269.68346 * 1 2 3 16 16 H 1.09002 * 109.46769 * 149.68763 * 1 2 3 17 17 H 1.09000 * 109.47486 * 29.69136 * 1 2 3 18 18 H 1.07996 * 126.32486 * 359.97438 * 3 2 1 19 19 H 1.07999 * 125.38894 * 180.11974 * 4 3 2 20 20 H 0.97001 * 120.00598 * 180.02562 * 10 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3436 1.1197 0.0000 4 6 3.6230 0.6685 0.0037 5 8 3.6183 -0.6738 -0.0036 6 6 2.3424 -1.1177 -0.0061 7 6 1.9333 -2.4540 -0.0129 8 1 0.8856 -2.6984 0.0813 9 6 2.8828 -3.4769 -0.1420 10 7 4.1588 -3.1892 -0.1378 11 14 2.3260 -5.2510 -0.3202 12 1 2.2657 -5.6086 -1.7603 13 1 3.2898 -6.1442 0.3716 14 1 0.9799 -5.4107 0.2863 15 1 -0.3634 -0.0057 1.0276 16 1 -0.3633 -0.8872 -0.5187 17 1 -0.3634 0.8927 -0.5090 18 1 2.0294 2.1529 -0.0004 19 1 4.5056 1.2909 0.0065 20 1 4.8160 -3.8971 -0.2275 RHF calculation, no. of doubly occupied orbitals= 27 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000213539163.mol2 20 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:44:29 Heat of formation + Delta-G solvation = -13.437492 kcal Electronic energy + Delta-G solvation = -7825.145522 eV Core-core repulsion = 6180.730585 eV Total energy + Delta-G solvation = -1644.414937 eV No. of doubly occupied orbitals = 27 Molecular weight (most abundant/longest-lived isotopes) = 152.058 amu Computer time = 0.08 seconds Orbital eigenvalues (eV) -40.16189 -33.60012 -32.16111 -29.04825 -26.86123 -23.94962 -20.04990 -18.69724 -17.02329 -15.22228 -14.55654 -13.93090 -13.12711 -12.57353 -11.84940 -11.71841 -11.32076 -11.05647 -10.82120 -10.54942 -10.39602 -9.66161 -9.42706 -7.91912 -7.08110 -6.79646 -4.32485 2.92658 3.06059 3.11109 3.65092 3.90809 4.13988 5.15001 5.26400 6.35726 6.57937 6.69423 6.82968 6.85224 7.07362 7.32912 7.44086 7.84816 8.07151 8.30491 8.67513 8.81484 9.35913 10.20401 Molecular weight = 152.06amu Principal moments of inertia in cm(-1) A = 0.081773 B = 0.021632 C = 0.017281 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 342.329805 B = 1294.085682 C = 1619.878748 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.036 4.036 2 C -0.377 4.377 3 C -0.169 4.169 4 C -0.185 4.185 5 O -0.160 6.160 6 C 0.209 3.791 7 C -0.444 4.444 8 H 0.102 0.898 9 C 0.067 3.933 10 N -0.780 5.780 11 Si 0.921 3.079 12 H -0.268 1.268 13 H -0.276 1.276 14 H -0.259 1.259 15 H 0.029 0.971 16 H 0.043 0.957 17 H 0.032 0.968 18 H 0.109 0.891 19 H 0.161 0.839 20 H 0.283 0.717 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.114 -0.744 -0.261 2.256 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.093 4.093 2 C -0.379 4.379 3 C -0.189 4.189 4 C -0.251 4.251 5 O -0.056 6.056 6 C 0.156 3.844 7 C -0.474 4.474 8 H 0.120 0.880 9 C -0.153 4.153 10 N -0.407 5.407 11 Si 0.745 3.255 12 H -0.193 1.193 13 H -0.201 1.201 14 H -0.183 1.183 15 H 0.048 0.952 16 H 0.062 0.938 17 H 0.051 0.949 18 H 0.127 0.873 19 H 0.178 0.822 20 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -1.620 -0.975 -0.268 1.910 hybrid contribution -0.150 -0.463 -0.092 0.495 sum -1.770 -1.438 -0.360 2.309 Atomic orbital electron populations 1.19538 0.92175 0.99146 0.98483 1.19967 0.94746 0.92083 1.31151 1.20897 0.93403 0.97305 1.07281 1.23150 0.97406 0.83087 1.21501 1.84420 1.28836 1.19266 1.73124 1.19468 0.79521 0.93178 0.92267 1.18702 0.95331 0.87230 1.46171 0.88015 1.26131 0.94449 1.02211 0.92543 1.69795 1.01463 1.35624 1.33789 0.86075 0.79721 0.80395 0.79281 1.19299 1.20067 1.18308 0.95206 0.93765 0.94876 0.87332 0.82152 0.90669 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.04 -0.82 10.16 36.00 0.37 -0.46 14 2 C -0.38 -10.12 6.28 -103.57 -0.65 -10.77 14 3 C -0.17 -4.28 10.81 -39.93 -0.43 -4.71 14 4 C -0.19 -4.79 12.07 29.81 0.36 -4.43 14 5 O -0.16 -4.74 8.99 3.65 0.03 -4.71 14 6 C 0.21 6.10 6.79 -38.53 -0.26 5.83 14 7 C -0.44 -12.36 9.04 -38.30 -0.35 -12.71 14 8 H 0.10 2.65 7.40 -52.49 -0.39 2.26 14 9 C 0.07 1.75 5.49 -17.27 -0.09 1.65 14 10 N -0.78 -21.45 12.03 55.56 0.67 -20.78 14 11 Si 0.92 18.99 29.57 -169.99 -5.03 13.97 14 12 H -0.27 -5.42 7.11 56.52 0.40 -5.02 14 13 H -0.28 -5.52 7.11 56.52 0.40 -5.12 14 14 H -0.26 -5.20 7.11 56.52 0.40 -4.79 14 15 H 0.03 0.63 8.14 -51.93 -0.42 0.20 14 16 H 0.04 0.96 7.65 -51.93 -0.40 0.56 14 17 H 0.03 0.66 8.14 -51.93 -0.42 0.24 14 18 H 0.11 2.38 8.06 -52.49 -0.42 1.96 14 19 H 0.16 3.49 8.06 -52.49 -0.42 3.07 14 20 H 0.28 6.95 8.30 -40.82 -0.34 6.62 14 LS Contribution 188.30 15.07 2.84 2.84 Total: -1.00 -30.16 188.30 -4.16 -34.32 By element: Atomic # 1 Polarization: 1.58 SS G_CDS: -1.61 Total: -0.03 kcal Atomic # 6 Polarization: -24.54 SS G_CDS: -1.06 Total: -25.60 kcal Atomic # 7 Polarization: -21.45 SS G_CDS: 0.67 Total: -20.78 kcal Atomic # 8 Polarization: -4.74 SS G_CDS: 0.03 Total: -4.71 kcal Atomic # 14 Polarization: 18.99 SS G_CDS: -5.03 Total: 13.97 kcal Total LS contribution 2.84 Total: 2.84 kcal Total: -30.16 -4.16 -34.32 kcal The number of atoms in the molecule is 20 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000213539163.mol2 20 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.882 kcal (2) G-P(sol) polarization free energy of solvation -30.164 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.281 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.156 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.320 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.437 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.08 seconds