Wall clock time and date at job start Mon Mar 30 2020 01:47:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86805 * 120.00276 * 2 1 4 4 H 1.48502 * 109.47055 * 239.99997 * 3 2 1 5 5 H 1.48499 * 109.46921 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.46940 * 119.99857 * 3 2 1 7 7 C 1.37882 * 120.00221 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00329 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99503 * 0.02562 * 7 2 1 10 10 H 1.08999 * 112.93893 * 51.84726 * 9 7 2 11 11 C 1.53896 * 113.64709 * 280.49590 * 9 7 2 12 12 C 1.53889 * 87.23772 * 270.48554 * 11 9 7 13 13 C 1.53251 * 86.88353 * 335.01509 * 12 11 9 14 14 C 1.52462 * 128.58257 * 165.11237 * 13 12 11 15 15 C 1.52464 * 128.58575 * 245.05299 * 13 12 11 16 16 H 0.97006 * 119.99938 * 0.02562 * 1 2 3 17 17 H 1.09003 * 113.58404 * 25.07210 * 11 9 7 18 18 H 1.08997 * 113.59104 * 155.89752 * 11 9 7 19 19 H 1.09002 * 113.64786 * 89.51940 * 12 11 9 20 20 H 1.09002 * 113.64068 * 220.51956 * 12 11 9 21 21 H 1.09006 * 117.51390 * 225.04979 * 14 13 12 22 22 H 1.09008 * 117.51287 * 10.15184 * 14 13 12 23 23 H 1.08994 * 117.51194 * 349.85490 * 15 13 12 24 24 H 1.09002 * 117.51145 * 134.95269 * 15 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6963 -1.2125 5 1 1.2842 2.7465 0.0006 6 1 3.1029 1.6963 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4991 -0.0017 10 1 0.5018 -2.5564 -0.7914 11 6 0.7194 -2.9062 1.3840 12 6 2.0588 -3.6317 1.6023 13 6 2.1574 -3.7324 0.0763 14 6 3.3734 -4.0743 -0.7775 15 6 2.1403 -4.9819 -0.7973 16 1 -0.4850 0.8401 -0.0004 17 1 0.5654 -2.0628 2.0570 18 1 -0.1384 -3.5774 1.3422 19 1 2.8287 -3.0030 2.0497 20 1 1.9573 -4.5969 2.0985 21 1 3.5597 -3.4588 -1.6576 22 1 4.2616 -4.4427 -0.2641 23 1 2.2175 -5.9471 -0.2970 24 1 1.5157 -4.9633 -1.6904 RHF calculation, no. of doubly occupied orbitals= 28 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000213540137.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:47:23 Heat of formation + Delta-G solvation = 20.507962 kcal Electronic energy + Delta-G solvation = -8055.165295 eV Core-core repulsion = 6548.055438 eV Total energy + Delta-G solvation = -1507.109857 eV No. of doubly occupied orbitals = 28 Molecular weight (most abundant/longest-lived isotopes) = 152.090 amu Computer time = 0.08 seconds Orbital eigenvalues (eV) -40.06638 -35.05264 -33.56441 -28.34439 -24.87202 -23.52521 -23.00208 -19.36547 -17.77024 -16.63619 -15.88139 -15.73811 -15.38553 -13.97637 -13.24734 -12.89469 -12.81680 -12.41390 -12.28323 -12.13850 -11.85356 -11.48269 -10.90183 -10.48924 -10.33191 -10.14773 -8.14159 -6.24070 1.40800 1.43047 1.50780 2.41639 3.11494 3.16670 3.78408 4.12506 4.26844 4.31991 4.68323 4.82094 4.84117 4.93202 5.07750 5.18028 5.37745 5.42874 5.45518 5.59265 5.78720 6.04913 6.41831 6.86662 7.43471 8.96249 Molecular weight = 152.09amu Principal moments of inertia in cm(-1) A = 0.077735 B = 0.019116 C = 0.017527 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 360.112799 B = 1464.392862 C = 1597.188380 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.926 5.926 2 C 0.008 3.992 3 Si 0.959 3.041 4 H -0.270 1.270 5 H -0.284 1.284 6 H -0.268 1.268 7 C -0.512 4.512 8 H 0.056 0.944 9 C 0.063 3.937 10 H -0.009 1.009 11 C -0.132 4.132 12 C -0.073 4.073 13 C -0.174 4.174 14 C -0.166 4.166 15 C -0.147 4.147 16 H 0.261 0.739 17 H 0.034 0.966 18 H 0.057 0.943 19 H 0.070 0.930 20 H 0.074 0.926 21 H 0.078 0.922 22 H 0.104 0.896 23 H 0.112 0.888 24 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.618 -5.556 0.915 7.283 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.190 4.190 3 Si 0.784 3.216 4 H -0.195 1.195 5 H -0.210 1.210 6 H -0.193 1.193 7 C -0.550 4.550 8 H 0.074 0.926 9 C 0.045 3.955 10 H 0.009 0.991 11 C -0.170 4.170 12 C -0.110 4.110 13 C -0.174 4.174 14 C -0.203 4.203 15 C -0.184 4.184 16 H 0.070 0.930 17 H 0.053 0.947 18 H 0.076 0.924 19 H 0.089 0.911 20 H 0.093 0.907 21 H 0.096 0.904 22 H 0.122 0.878 23 H 0.131 0.869 24 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 4.464 -5.436 0.916 7.094 hybrid contribution 0.009 1.091 -0.131 1.098 sum 4.473 -4.345 0.785 6.286 Atomic orbital electron populations 1.70107 1.07530 1.27460 1.51383 1.25850 0.95673 1.02717 0.94766 0.85597 0.78331 0.78630 0.79034 1.19471 1.20956 1.19315 1.21102 0.92796 0.90897 1.50230 0.92622 1.19388 0.92422 0.90998 0.92742 0.99087 1.22734 0.95878 0.97974 1.00380 1.22128 0.97037 0.99194 0.92633 1.22609 1.01817 0.98089 0.94928 1.22656 0.92409 1.03102 1.02108 1.22777 1.00785 0.93952 1.00883 0.92993 0.94742 0.92442 0.91139 0.90749 0.90393 0.87794 0.86934 0.89635 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.05 13.29 21.45 0.28 -55.77 14 2 C 0.01 0.47 5.46 84.66 0.46 0.93 14 3 Si 0.96 44.55 29.54 68.60 2.03 46.57 14 4 H -0.27 -12.11 7.11 99.48 0.71 -11.41 14 5 H -0.28 -12.93 7.11 99.48 0.71 -12.22 14 6 H -0.27 -12.00 7.11 99.48 0.71 -11.29 14 7 C -0.51 -29.21 8.51 25.60 0.22 -28.99 14 8 H 0.06 3.11 7.81 -2.91 -0.02 3.09 14 9 C 0.06 3.35 3.62 -11.15 -0.04 3.31 14 10 H -0.01 -0.54 8.14 -2.39 -0.02 -0.56 14 11 C -0.13 -6.33 7.66 31.20 0.24 -6.09 14 12 C -0.07 -2.95 7.84 30.98 0.24 -2.71 14 13 C -0.17 -7.41 2.62 -52.37 -0.14 -7.54 14 14 C -0.17 -6.05 10.53 30.46 0.32 -5.73 14 15 C -0.15 -5.04 10.53 30.46 0.32 -4.72 14 16 H 0.26 14.98 8.31 -92.70 -0.77 14.21 14 17 H 0.03 1.79 8.09 -2.39 -0.02 1.77 14 18 H 0.06 2.58 8.14 -2.39 -0.02 2.56 14 19 H 0.07 2.91 8.14 -2.39 -0.02 2.89 14 20 H 0.07 2.50 8.14 -2.39 -0.02 2.48 14 21 H 0.08 2.99 8.14 -2.38 -0.02 2.97 14 22 H 0.10 3.25 8.14 -2.38 -0.02 3.23 14 23 H 0.11 3.16 8.14 -2.39 -0.02 3.14 14 24 H 0.09 2.92 8.14 -2.39 -0.02 2.91 14 Total: -1.00 -62.07 210.26 5.09 -56.98 By element: Atomic # 1 Polarization: 2.61 SS G_CDS: 1.15 Total: 3.76 kcal Atomic # 6 Polarization: -53.17 SS G_CDS: 1.63 Total: -51.55 kcal Atomic # 7 Polarization: -56.05 SS G_CDS: 0.28 Total: -55.77 kcal Atomic # 14 Polarization: 44.55 SS G_CDS: 2.03 Total: 46.57 kcal Total: -62.07 5.09 -56.98 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000213540137.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.487 kcal (2) G-P(sol) polarization free energy of solvation -62.068 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.419 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.089 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.979 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.508 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.08 seconds