Wall clock time and date at job start Mon Mar 30 2020 01:47:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86800 * 119.99771 * 2 1 4 4 H 1.48503 * 109.46845 * 90.00345 * 3 2 1 5 5 H 1.48503 * 109.47399 * 209.99834 * 3 2 1 6 6 H 1.48498 * 109.47295 * 330.00441 * 3 2 1 7 7 C 1.37880 * 120.00210 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99685 * 180.02562 * 7 2 1 9 9 C 1.50696 * 119.99983 * 359.97438 * 7 2 1 10 10 H 1.09005 * 115.55719 * 325.66416 * 9 7 2 11 11 C 1.53124 * 117.50943 * 111.39334 * 9 7 2 12 12 C 1.52457 * 117.51404 * 179.85661 * 9 7 2 13 13 C 1.53255 * 128.58429 * 134.95574 * 12 9 7 14 14 C 1.53893 * 86.87991 * 194.88684 * 13 12 9 15 15 C 1.53248 * 128.58592 * 10.15115 * 12 9 7 16 16 H 0.97000 * 119.99462 * 179.97438 * 1 2 3 17 17 H 1.09003 * 117.50869 * 214.90022 * 11 9 7 18 18 H 1.08996 * 117.51650 * 0.02562 * 11 9 7 19 19 H 1.09000 * 113.64779 * 309.38042 * 13 12 9 20 20 H 1.09005 * 113.64716 * 80.39055 * 13 12 9 21 21 H 1.09004 * 113.58685 * 270.38870 * 14 13 12 22 22 H 1.09008 * 113.65932 * 139.58082 * 14 13 12 23 23 H 1.09000 * 113.65452 * 279.61572 * 15 12 9 24 24 H 1.09004 * 113.64520 * 50.61591 * 15 12 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 1.4001 5 1 3.5467 1.4403 -0.7000 6 1 1.4465 2.6527 -0.6999 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1939 -0.0001 9 6 1.2512 -2.4991 -0.0005 10 1 0.3130 -2.5005 0.5545 11 6 1.3261 -3.3591 -1.2653 12 6 2.0700 -3.7851 -0.0045 13 6 1.8716 -5.0472 0.8419 14 6 3.2927 -5.4553 0.4148 15 6 3.5786 -3.9583 0.2025 16 1 -0.4849 -0.8401 -0.0004 17 1 0.4374 -3.9266 -1.5416 18 1 1.9206 -2.9809 -2.0969 19 1 1.7763 -4.8474 1.9092 20 1 1.0938 -5.7101 0.4627 21 1 3.3208 -6.0396 -0.5050 22 1 3.8794 -5.9019 1.2177 23 1 4.1693 -3.7482 -0.6891 24 1 3.9584 -3.4553 1.0918 RHF calculation, no. of doubly occupied orbitals= 28 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000213540276.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:47:02 Heat of formation + Delta-G solvation = 13.077220 kcal Electronic energy + Delta-G solvation = -7948.971799 eV Core-core repulsion = 6441.539721 eV Total energy + Delta-G solvation = -1507.432078 eV No. of doubly occupied orbitals = 28 Molecular weight (most abundant/longest-lived isotopes) = 152.090 amu Computer time = 0.09 seconds Orbital eigenvalues (eV) -40.13679 -35.67704 -33.32259 -27.16755 -26.35825 -23.78051 -22.66632 -19.43567 -18.40858 -16.39659 -16.05909 -15.74097 -15.26484 -14.00771 -13.26051 -13.08728 -12.90010 -12.63835 -12.30951 -12.13264 -11.93385 -11.20003 -11.07888 -10.67683 -10.35817 -10.03722 -8.68376 -6.32059 1.51935 1.60807 1.79213 2.55310 2.94135 3.34305 3.74688 3.90905 3.98854 4.31475 4.46474 4.70459 4.81153 4.86938 4.88220 4.92527 5.06001 5.24313 5.32524 5.52937 5.60851 6.10968 6.15147 6.58718 7.44747 8.72535 Molecular weight = 152.09amu Principal moments of inertia in cm(-1) A = 0.092707 B = 0.016494 C = 0.015079 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 301.954134 B = 1697.208162 C = 1856.443248 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.033 4.033 3 Si 1.122 2.878 4 H -0.271 1.271 5 H -0.271 1.271 6 H -0.282 1.282 7 C -0.577 4.577 8 H 0.048 0.952 9 C -0.025 4.025 10 H 0.037 0.963 11 C -0.178 4.178 12 C -0.176 4.176 13 C -0.100 4.100 14 C -0.114 4.114 15 C -0.097 4.097 16 H 0.257 0.743 17 H 0.080 0.920 18 H 0.071 0.929 19 H 0.078 0.922 20 H 0.068 0.932 21 H 0.087 0.913 22 H 0.087 0.913 23 H 0.054 0.946 24 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.890 -6.874 0.618 9.074 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.231 4.231 3 Si 0.943 3.057 4 H -0.197 1.197 5 H -0.196 1.196 6 H -0.207 1.207 7 C -0.615 4.615 8 H 0.067 0.933 9 C -0.043 4.043 10 H 0.055 0.945 11 C -0.216 4.216 12 C -0.176 4.176 13 C -0.137 4.137 14 C -0.151 4.151 15 C -0.134 4.134 16 H 0.067 0.933 17 H 0.099 0.901 18 H 0.090 0.910 19 H 0.096 0.904 20 H 0.087 0.913 21 H 0.106 0.894 22 H 0.105 0.895 23 H 0.073 0.927 24 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 5.698 -5.251 0.621 7.773 hybrid contribution -0.274 -1.566 -0.145 1.596 sum 5.424 -6.817 0.476 8.725 Atomic orbital electron populations 1.70878 1.07917 1.30012 1.48505 1.27436 0.96631 1.06574 0.92450 0.82881 0.74082 0.70940 0.77835 1.19682 1.19564 1.20736 1.21792 0.93858 0.91736 1.54086 0.93350 1.19819 0.96422 0.91109 0.96962 0.94519 1.22870 1.00997 1.05638 0.92047 1.22466 0.96332 0.97455 1.01339 1.22476 0.98312 0.94255 0.98668 1.22665 0.95637 0.94777 1.02025 1.22324 0.93305 0.97166 1.00638 0.93321 0.90115 0.91044 0.90363 0.91332 0.89397 0.89489 0.92741 0.91031 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.87 13.65 21.45 0.29 -58.58 14 2 C -0.03 -1.95 5.46 84.65 0.46 -1.49 14 3 Si 1.12 51.07 29.90 68.60 2.05 53.12 14 4 H -0.27 -11.58 7.11 99.48 0.71 -10.88 14 5 H -0.27 -11.43 7.11 99.48 0.71 -10.73 14 6 H -0.28 -12.66 7.11 99.48 0.71 -11.96 14 7 C -0.58 -33.85 9.06 25.60 0.23 -33.61 14 8 H 0.05 2.80 7.57 -2.91 -0.02 2.78 14 9 C -0.02 -1.33 5.26 -11.68 -0.06 -1.39 14 10 H 0.04 2.13 7.07 -2.38 -0.02 2.12 14 11 C -0.18 -8.35 10.24 30.46 0.31 -8.04 14 12 C -0.18 -7.63 2.91 -52.37 -0.15 -7.78 14 13 C -0.10 -3.42 8.10 30.98 0.25 -3.17 14 14 C -0.11 -3.31 8.08 31.19 0.25 -3.06 14 15 C -0.10 -3.63 7.65 30.97 0.24 -3.40 14 16 H 0.26 16.37 6.80 -92.71 -0.63 15.74 14 17 H 0.08 3.46 8.14 -2.39 -0.02 3.44 14 18 H 0.07 3.41 8.14 -2.39 -0.02 3.39 14 19 H 0.08 2.62 8.14 -2.39 -0.02 2.60 14 20 H 0.07 2.15 8.14 -2.38 -0.02 2.13 14 21 H 0.09 2.31 8.14 -2.39 -0.02 2.29 14 22 H 0.09 2.07 8.14 -2.38 -0.02 2.05 14 23 H 0.05 2.02 8.14 -2.39 -0.02 2.00 14 24 H 0.07 2.73 8.14 -2.38 -0.02 2.71 14 Total: -1.00 -64.87 208.19 5.17 -59.70 By element: Atomic # 1 Polarization: 6.40 SS G_CDS: 1.30 Total: 7.69 kcal Atomic # 6 Polarization: -63.47 SS G_CDS: 1.53 Total: -61.94 kcal Atomic # 7 Polarization: -58.87 SS G_CDS: 0.29 Total: -58.58 kcal Atomic # 14 Polarization: 51.07 SS G_CDS: 2.05 Total: 53.12 kcal Total: -64.87 5.17 -59.70 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000213540276.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.776 kcal (2) G-P(sol) polarization free energy of solvation -64.871 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.905 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.172 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.698 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.077 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.10 seconds