Wall clock time and date at job start Mon Mar 30 2020 01:46:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86796 * 120.00010 * 2 1 4 4 H 1.48502 * 109.47115 * 270.00383 * 3 2 1 5 5 H 1.48505 * 109.47121 * 30.00313 * 3 2 1 6 6 H 1.48495 * 109.47165 * 150.00063 * 3 2 1 7 7 C 1.37869 * 119.99638 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00012 * 179.97438 * 7 2 1 9 9 C 1.50695 * 120.00300 * 359.97438 * 7 2 1 10 10 C 1.53865 * 118.34311 * 74.49183 * 9 7 2 11 11 C 1.53704 * 87.31025 * 149.52913 * 10 9 7 12 12 C 1.53697 * 87.44904 * 335.24304 * 11 10 9 13 13 C 1.53709 * 116.72775 * 109.99100 * 12 11 10 14 14 C 1.53699 * 117.81310 * 285.05870 * 9 7 2 15 15 H 0.97010 * 119.99912 * 359.97438 * 1 2 3 16 16 H 1.08999 * 113.56489 * 34.93261 * 10 9 7 17 17 H 1.08997 * 113.61193 * 264.13807 * 10 9 7 18 18 H 1.09002 * 113.56889 * 220.58223 * 11 10 9 19 19 H 1.08996 * 113.56634 * 89.90177 * 11 10 9 20 20 H 1.09002 * 117.81323 * 258.88236 * 12 11 10 21 21 H 1.08993 * 113.56922 * 54.00593 * 13 12 11 22 22 H 1.09000 * 113.56848 * 184.69394 * 13 12 11 23 23 H 1.08999 * 113.56866 * 145.38244 * 14 9 7 24 24 H 1.08996 * 113.56932 * 14.62701 * 14 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0044 -1.1940 -0.0005 8 1 3.0844 -1.1941 -0.0010 9 6 1.2509 -2.4991 -0.0005 10 6 0.5716 -2.9503 -1.3053 11 6 0.8165 -4.3970 -0.8473 12 6 1.9814 -3.8593 -0.0011 13 6 1.7923 -3.8739 1.5242 14 6 0.5870 -2.9438 1.3124 15 1 -0.4850 0.8401 0.0004 16 1 1.1268 -2.6774 -2.2026 17 1 -0.4837 -2.6840 -1.3627 18 1 1.1324 -5.0613 -1.6518 19 1 0.0010 -4.8101 -0.2537 20 1 2.9922 -3.9844 -0.3894 21 1 1.5229 -4.8529 1.9206 22 1 2.6131 -3.4082 2.0696 23 1 -0.3534 -3.4754 1.1669 24 1 0.5139 -2.1492 2.0548 RHF calculation, no. of doubly occupied orbitals= 28 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000213540430.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:46:57 Heat of formation + Delta-G solvation = 25.323870 kcal Electronic energy + Delta-G solvation = -8253.872551 eV Core-core repulsion = 6746.971527 eV Total energy + Delta-G solvation = -1506.901024 eV No. of doubly occupied orbitals = 28 Molecular weight (most abundant/longest-lived isotopes) = 152.090 amu Computer time = 0.09 seconds Orbital eigenvalues (eV) -41.44894 -34.41717 -31.84555 -28.46609 -25.89530 -23.70805 -22.67364 -19.13941 -17.66357 -16.70250 -16.03666 -15.17099 -14.91480 -14.00036 -13.29583 -13.22434 -12.88062 -12.48255 -12.30218 -12.12280 -11.67668 -11.55012 -10.88428 -10.41489 -10.33725 -9.78073 -8.08500 -6.18947 1.40911 1.41527 1.51672 2.44009 3.20164 3.77620 4.01841 4.16296 4.37266 4.45616 4.65972 4.92263 4.92600 5.01347 5.19913 5.28945 5.43514 5.49971 5.58630 5.76777 5.94133 6.09881 6.48343 6.89168 7.48274 9.00172 Molecular weight = 152.09amu Principal moments of inertia in cm(-1) A = 0.085510 B = 0.020691 C = 0.019802 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 327.367995 B = 1352.909401 C = 1413.624717 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.914 5.914 2 C 0.019 3.981 3 Si 0.951 3.049 4 H -0.276 1.276 5 H -0.283 1.283 6 H -0.269 1.269 7 C -0.515 4.515 8 H 0.050 0.950 9 C 0.030 3.970 10 C -0.121 4.121 11 C -0.102 4.102 12 C -0.166 4.166 13 C -0.103 4.103 14 C -0.114 4.114 15 H 0.259 0.741 16 H 0.054 0.946 17 H 0.030 0.970 18 H 0.076 0.924 19 H 0.079 0.921 20 H 0.080 0.920 21 H 0.073 0.927 22 H 0.070 0.930 23 H 0.061 0.939 24 H 0.031 0.969 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.059 -5.106 0.392 5.519 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.552 5.552 2 C -0.180 4.180 3 Si 0.777 3.223 4 H -0.201 1.201 5 H -0.209 1.209 6 H -0.193 1.193 7 C -0.553 4.553 8 H 0.068 0.932 9 C 0.029 3.971 10 C -0.159 4.159 11 C -0.140 4.140 12 C -0.184 4.184 13 C -0.140 4.140 14 C -0.152 4.152 15 H 0.068 0.932 16 H 0.073 0.927 17 H 0.049 0.951 18 H 0.095 0.905 19 H 0.098 0.902 20 H 0.098 0.902 21 H 0.091 0.909 22 H 0.088 0.912 23 H 0.079 0.921 24 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges 1.911 -4.982 0.396 5.351 hybrid contribution 0.225 1.208 -0.062 1.231 sum 2.137 -3.774 0.334 4.349 Atomic orbital electron populations 1.70114 1.07167 1.26978 1.50986 1.25702 0.95612 1.02045 0.94624 0.85673 0.78794 0.79648 0.78227 1.20139 1.20910 1.19316 1.20931 0.92335 0.91277 1.50794 0.93197 1.20657 0.93980 0.91128 0.91291 1.22767 0.98512 0.95828 0.98819 1.22536 0.97135 0.95641 0.98646 1.24056 0.97572 1.01228 0.95544 1.22494 0.97806 0.98517 0.95152 1.22594 0.96487 0.97390 0.98697 0.93239 0.92687 0.95088 0.90500 0.90240 0.90161 0.90884 0.91185 0.92075 0.94997 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -54.07 13.29 21.44 0.28 -53.79 14 2 C 0.02 1.10 5.46 84.65 0.46 1.56 14 3 Si 0.95 44.34 29.54 68.60 2.03 46.36 14 4 H -0.28 -12.53 7.11 99.48 0.71 -11.83 14 5 H -0.28 -12.96 7.11 99.48 0.71 -12.26 14 6 H -0.27 -12.15 7.11 99.48 0.71 -11.44 14 7 C -0.52 -29.16 9.15 25.60 0.23 -28.92 14 8 H 0.05 2.80 7.81 -2.91 -0.02 2.78 14 9 C 0.03 1.50 1.07 -51.93 -0.06 1.45 14 10 C -0.12 -5.73 7.67 31.12 0.24 -5.49 14 11 C -0.10 -3.87 7.43 31.07 0.23 -3.64 14 12 C -0.17 -6.89 5.97 -9.85 -0.06 -6.95 14 13 C -0.10 -4.03 7.91 31.07 0.25 -3.79 14 14 C -0.11 -5.33 7.17 31.07 0.22 -5.11 14 15 H 0.26 14.57 8.31 -92.70 -0.77 13.80 14 16 H 0.05 2.61 8.14 -2.39 -0.02 2.59 14 17 H 0.03 1.53 8.14 -2.39 -0.02 1.51 14 18 H 0.08 2.48 8.14 -2.39 -0.02 2.46 14 19 H 0.08 2.81 7.02 -2.39 -0.02 2.79 14 20 H 0.08 3.23 8.14 -2.39 -0.02 3.21 14 21 H 0.07 2.40 8.14 -2.39 -0.02 2.38 14 22 H 0.07 2.77 8.14 -2.39 -0.02 2.75 14 23 H 0.06 2.69 7.02 -2.39 -0.02 2.67 14 24 H 0.03 1.62 8.13 -2.39 -0.02 1.60 14 Total: -1.00 -60.28 203.11 4.99 -55.29 By element: Atomic # 1 Polarization: 1.87 SS G_CDS: 1.16 Total: 3.02 kcal Atomic # 6 Polarization: -52.41 SS G_CDS: 1.52 Total: -50.89 kcal Atomic # 7 Polarization: -54.07 SS G_CDS: 0.28 Total: -53.79 kcal Atomic # 14 Polarization: 44.34 SS G_CDS: 2.03 Total: 46.36 kcal Total: -60.28 4.99 -55.29 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000213540430.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.616 kcal (2) G-P(sol) polarization free energy of solvation -60.281 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.335 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.989 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.293 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.324 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.09 seconds