Wall clock time and date at job start Mon Mar 30 2020 01:48:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86805 * 119.99697 * 2 1 4 4 H 1.48504 * 109.46837 * 269.99845 * 3 2 1 5 5 H 1.48498 * 109.47445 * 29.99501 * 3 2 1 6 6 H 1.48500 * 109.47185 * 150.00238 * 3 2 1 7 7 C 1.37873 * 120.00263 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99954 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99656 * 0.02562 * 7 2 1 10 10 C 1.52998 * 119.29466 * 250.94501 * 9 7 2 11 11 C 1.53165 * 60.49458 * 247.80628 * 10 9 7 12 12 H 1.08999 * 119.93352 * 111.13128 * 11 10 9 13 13 C 1.54266 * 118.09930 * 266.60163 * 11 10 9 14 14 C 1.54891 * 104.31343 * 87.61021 * 13 11 10 15 15 C 1.54264 * 117.41283 * 45.29223 * 9 7 2 16 16 H 0.96998 * 119.99954 * 0.02562 * 1 2 3 17 17 H 1.09003 * 117.46306 * 355.35901 * 10 9 7 18 18 H 1.08998 * 117.45808 * 140.18852 * 10 9 7 19 19 H 1.09002 * 110.48609 * 328.86434 * 13 11 10 20 20 H 1.08998 * 110.48769 * 206.35527 * 13 11 10 21 21 H 1.09000 * 110.75322 * 80.30558 * 14 13 11 22 22 H 1.09002 * 110.75336 * 203.49108 * 14 13 11 23 23 H 1.08993 * 110.49070 * 358.89956 * 15 9 7 24 24 H 1.09001 * 110.59511 * 236.31324 * 15 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4465 2.6528 0.6999 6 1 3.5467 1.4403 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1939 0.0001 9 6 1.2511 -2.4991 0.0005 10 6 1.2535 -3.3649 1.2619 11 6 1.9736 -3.8616 0.0047 12 1 3.0615 -3.9281 -0.0086 13 6 1.1945 -4.7715 -0.9673 14 6 0.4751 -3.7858 -1.9212 15 6 0.0620 -2.6327 -0.9731 16 1 -0.4850 0.8400 -0.0004 17 1 1.8720 -3.0352 2.0968 18 1 0.3207 -3.8585 1.5345 19 1 0.4678 -5.3760 -0.4244 20 1 1.8800 -5.4100 -1.5246 21 1 1.1573 -3.4267 -2.6918 22 1 -0.4012 -4.2531 -2.3704 23 1 -0.0772 -1.7088 -1.5343 24 1 -0.8488 -2.8907 -0.4329 RHF calculation, no. of doubly occupied orbitals= 28 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000213540510.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:48:40 Heat of formation + Delta-G solvation = 11.994210 kcal Electronic energy + Delta-G solvation = -8157.733877 eV Core-core repulsion = 6650.254836 eV Total energy + Delta-G solvation = -1507.479041 eV No. of doubly occupied orbitals = 28 Molecular weight (most abundant/longest-lived isotopes) = 152.090 amu Computer time = 0.08 seconds Orbital eigenvalues (eV) -38.08776 -32.43942 -30.39561 -27.11445 -24.89177 -21.32860 -19.33545 -18.32733 -16.08183 -14.75292 -14.00708 -13.68129 -12.24570 -12.09630 -11.79705 -11.10871 -10.96084 -10.80535 -10.34947 -10.05757 -9.88031 -9.75691 -9.23738 -8.59749 -8.45122 -7.83693 -6.00622 -4.03105 3.30067 3.36795 3.40343 4.41249 4.99677 5.41784 5.68745 5.90872 6.10742 6.37136 6.52858 6.68633 6.72666 6.82820 6.84403 6.94454 6.99610 7.28977 7.44545 7.58070 7.81666 8.04084 8.53596 8.95500 9.56587 11.06154 Molecular weight = 152.09amu Principal moments of inertia in cm(-1) A = 0.087115 B = 0.019732 C = 0.018554 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 321.336144 B = 1418.674019 C = 1508.772489 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.881 5.881 2 C 0.067 3.933 3 Si 0.894 3.106 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.485 4.485 8 H 0.058 0.942 9 C 0.057 3.943 10 C -0.180 4.180 11 C -0.219 4.219 12 H 0.086 0.914 13 C -0.085 4.085 14 C -0.128 4.128 15 C -0.068 4.068 16 H 0.260 0.740 17 H 0.076 0.924 18 H 0.062 0.938 19 H 0.050 0.950 20 H 0.048 0.952 21 H 0.058 0.942 22 H 0.046 0.954 23 H 0.081 0.919 24 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.848 -3.803 -1.543 4.191 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.518 5.518 2 C -0.135 4.135 3 Si 0.722 3.278 4 H -0.206 1.206 5 H -0.211 1.211 6 H -0.199 1.199 7 C -0.523 4.523 8 H 0.077 0.923 9 C 0.057 3.943 10 C -0.218 4.218 11 C -0.237 4.237 12 H 0.104 0.896 13 C -0.123 4.123 14 C -0.166 4.166 15 C -0.105 4.105 16 H 0.070 0.930 17 H 0.095 0.905 18 H 0.081 0.919 19 H 0.068 0.932 20 H 0.067 0.933 21 H 0.076 0.924 22 H 0.065 0.935 23 H 0.100 0.900 24 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges 0.682 -3.663 -1.556 4.038 hybrid contribution 0.500 0.803 0.131 0.955 sum 1.182 -2.860 -1.425 3.407 Atomic orbital electron populations 1.70017 1.05881 1.26430 1.49459 1.24987 0.94907 0.98998 0.94648 0.86563 0.79868 0.83233 0.78162 1.20562 1.21143 1.19859 1.20472 0.92325 0.88920 1.50557 0.92344 1.19902 0.93710 0.88022 0.92699 1.23080 0.99669 1.06467 0.92566 1.23200 0.96880 1.02361 1.01253 0.89580 1.21805 0.97617 0.96519 0.96315 1.22772 0.98409 0.97132 0.98259 1.21706 0.96036 0.96841 0.95953 0.92998 0.90499 0.91949 0.93151 0.93310 0.92356 0.93486 0.90004 0.94165 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.32 11.37 55.43 0.63 -24.69 14 2 C 0.07 1.88 5.25 -17.82 -0.09 1.79 14 3 Si 0.89 21.32 29.54 -169.99 -5.02 16.30 14 4 H -0.28 -6.57 7.11 56.52 0.40 -6.17 14 5 H -0.29 -6.75 7.11 56.52 0.40 -6.35 14 6 H -0.27 -6.46 7.11 56.52 0.40 -6.06 14 7 C -0.49 -13.77 9.28 -34.44 -0.32 -14.09 14 8 H 0.06 1.65 7.81 -52.49 -0.41 1.23 14 9 C 0.06 1.49 2.36 -154.36 -0.36 1.13 14 10 C -0.18 -4.30 9.85 -26.65 -0.26 -4.57 14 11 C -0.22 -4.98 6.87 -89.23 -0.61 -5.59 14 12 H 0.09 1.92 8.14 -51.93 -0.42 1.50 14 13 C -0.09 -1.68 6.61 -25.07 -0.17 -1.85 14 14 C -0.13 -2.63 6.91 -24.74 -0.17 -2.80 14 15 C -0.07 -1.67 5.51 -25.07 -0.14 -1.81 14 16 H 0.26 7.09 8.31 -40.82 -0.34 6.75 14 17 H 0.08 1.81 8.14 -51.93 -0.42 1.39 14 18 H 0.06 1.41 8.14 -51.93 -0.42 0.99 14 19 H 0.05 0.94 8.14 -51.93 -0.42 0.52 14 20 H 0.05 0.85 8.14 -51.93 -0.42 0.43 14 21 H 0.06 1.18 8.14 -51.93 -0.42 0.76 14 22 H 0.05 0.85 8.14 -51.93 -0.42 0.42 14 23 H 0.08 2.20 6.65 -51.93 -0.35 1.85 14 24 H 0.04 0.98 8.14 -51.93 -0.42 0.56 14 LS Contribution 202.77 15.07 3.06 3.06 Total: -1.00 -28.55 202.77 -6.74 -35.28 By element: Atomic # 1 Polarization: 1.11 SS G_CDS: -3.27 Total: -2.16 kcal Atomic # 6 Polarization: -25.66 SS G_CDS: -2.13 Total: -27.78 kcal Atomic # 7 Polarization: -25.32 SS G_CDS: 0.63 Total: -24.69 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -5.02 Total: 16.30 kcal Total LS contribution 3.06 Total: 3.06 kcal Total: -28.55 -6.74 -35.28 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000213540510.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.275 kcal (2) G-P(sol) polarization free energy of solvation -28.545 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.730 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.735 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.281 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.994 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.08 seconds