Wall clock time and date at job start Mon Mar 30 2020 02:07:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 O 1.34296 * 127.88631 * 2 1 4 4 N 1.20937 * 109.93551 * 180.02562 * 3 2 1 5 5 N 1.23377 * 113.82813 * 359.74132 * 4 3 2 6 6 C 1.36539 * 108.40321 * 0.41189 * 5 4 3 7 7 C 1.41385 * 128.19802 * 179.88026 * 6 5 4 8 8 H 1.08002 * 120.00221 * 179.68547 * 7 6 5 9 9 C 1.39759 * 119.99986 * 359.40264 * 7 6 5 10 10 N 1.30984 * 119.99859 * 0.27895 * 9 7 6 11 11 Si 1.86803 * 119.99951 * 180.27329 * 9 7 6 12 12 H 1.48496 * 109.47191 * 0.02562 * 11 9 7 13 13 H 1.48503 * 109.46768 * 120.00144 * 11 9 7 14 14 H 1.48498 * 109.47283 * 240.00395 * 11 9 7 15 15 H 1.08998 * 109.47167 * 269.95528 * 1 2 3 16 16 H 1.09001 * 109.47342 * 29.95271 * 1 2 3 17 17 H 1.08997 * 109.47574 * 149.94717 * 1 2 3 18 18 H 0.97005 * 119.99776 * 179.97438 * 10 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.3317 1.0599 0.0000 4 7 3.4822 0.6872 -0.0005 5 7 3.6085 -0.5401 0.0042 6 6 2.3639 -1.1016 -0.0007 7 6 2.0239 -2.4739 -0.0003 8 1 0.9862 -2.7732 0.0005 9 6 3.0306 -3.4433 -0.0070 10 7 4.2892 -3.0804 -0.0081 11 14 2.5813 -5.2565 -0.0143 12 1 1.1033 -5.4002 -0.0122 13 1 3.1391 -5.8997 -1.2310 14 1 3.1444 -5.9108 1.1940 15 1 -0.3633 -0.0008 1.0276 16 1 -0.3634 0.8904 -0.5131 17 1 -0.3634 -0.8895 -0.5146 18 1 4.9879 -3.7532 -0.0124 RHF calculation, no. of doubly occupied orbitals= 27 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000213541737.mol2 18 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:07:14 Heat of formation + Delta-G solvation = 57.012200 kcal Electronic energy + Delta-G solvation = -8044.730009 eV Core-core repulsion = 6272.518178 eV Total energy + Delta-G solvation = -1772.211831 eV No. of doubly occupied orbitals = 27 Molecular weight (most abundant/longest-lived isotopes) = 154.048 amu Computer time = 0.06 seconds Orbital eigenvalues (eV) -43.64650 -34.73069 -33.20819 -31.73709 -27.62033 -25.71173 -22.08151 -20.34667 -17.89146 -16.43483 -15.32450 -14.97944 -13.36610 -12.95636 -12.27543 -11.99857 -11.41093 -11.22394 -10.99607 -10.46235 -10.31959 -10.18697 -9.31729 -9.27225 -7.91188 -6.72719 -4.58737 2.69514 3.05696 3.06700 3.10960 3.89334 4.01974 4.64728 5.19738 6.02495 6.36504 6.38147 6.55331 6.82708 6.98420 7.13270 7.34194 8.12660 8.45911 8.71098 10.22764 10.51202 Molecular weight = 154.05amu Principal moments of inertia in cm(-1) A = 0.086763 B = 0.021025 C = 0.017080 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 322.640298 B = 1331.432440 C = 1638.924786 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.015 4.015 2 C -0.284 4.284 3 O 0.027 5.973 4 N -0.178 5.178 5 N -0.245 5.245 6 C 0.149 3.851 7 C -0.430 4.430 8 H 0.093 0.907 9 C 0.069 3.931 10 N -0.758 5.758 11 Si 0.920 3.080 12 H -0.259 1.259 13 H -0.272 1.272 14 H -0.272 1.272 15 H 0.051 0.949 16 H 0.052 0.948 17 H 0.071 0.929 18 H 0.280 0.720 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.288 -1.564 -0.060 5.515 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C -0.352 4.352 3 O -0.024 6.024 4 N -0.041 5.041 5 N -0.143 5.143 6 C 0.032 3.968 7 C -0.462 4.462 8 H 0.111 0.889 9 C -0.153 4.153 10 N -0.382 5.382 11 Si 0.744 3.256 12 H -0.183 1.183 13 H -0.198 1.198 14 H -0.197 1.197 15 H 0.070 0.930 16 H 0.071 0.929 17 H 0.089 0.911 18 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -3.502 -1.135 -0.060 3.682 hybrid contribution -1.014 -1.103 0.000 1.498 sum -4.516 -2.237 -0.060 5.040 Atomic orbital electron populations 1.19466 0.85647 1.01456 1.00722 1.24565 0.94778 0.84505 1.31352 1.84638 1.13271 1.36313 1.68216 1.76220 0.99658 1.12586 1.15618 1.74707 1.24852 0.98021 1.16726 1.20442 0.85347 0.95013 0.96035 1.18637 0.94630 0.86820 1.46104 0.88869 1.26016 0.94519 1.01967 0.92830 1.70020 1.00124 1.36016 1.31995 0.86062 0.79971 0.80941 0.78612 1.18287 1.19756 1.19744 0.92995 0.92949 0.91056 0.90927 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.01 -0.28 10.37 36.00 0.37 0.10 13 2 C -0.28 -7.14 7.77 -33.82 -0.26 -7.41 13 3 O 0.03 0.71 11.31 16.49 0.19 0.90 13 4 N -0.18 -4.98 12.95 60.31 0.78 -4.20 13 5 N -0.25 -7.36 10.77 32.44 0.35 -7.01 13 6 C 0.15 4.24 6.88 -84.09 -0.58 3.67 13 7 C -0.43 -11.58 9.33 -37.82 -0.35 -11.93 13 8 H 0.09 2.28 7.74 -52.49 -0.41 1.88 13 9 C 0.07 1.78 5.49 -17.34 -0.10 1.68 13 10 N -0.76 -20.93 12.07 55.54 0.67 -20.26 13 11 Si 0.92 18.65 29.56 -169.99 -5.02 13.62 13 12 H -0.26 -5.05 7.11 56.52 0.40 -4.65 13 13 H -0.27 -5.43 7.11 56.52 0.40 -5.03 13 14 H -0.27 -5.43 7.11 56.52 0.40 -5.03 13 15 H 0.05 0.90 8.14 -51.93 -0.42 0.47 13 16 H 0.05 0.86 8.14 -51.93 -0.42 0.44 13 17 H 0.07 1.28 8.04 -51.93 -0.42 0.86 13 18 H 0.28 6.94 8.30 -40.82 -0.34 6.60 13 LS Contribution 178.21 15.07 2.69 2.69 Total: -1.00 -30.55 178.21 -2.07 -32.62 By element: Atomic # 1 Polarization: -3.66 SS G_CDS: -0.80 Total: -4.46 kcal Atomic # 6 Polarization: -12.98 SS G_CDS: -0.92 Total: -13.89 kcal Atomic # 7 Polarization: -33.28 SS G_CDS: 1.80 Total: -31.47 kcal Atomic # 8 Polarization: 0.71 SS G_CDS: 0.19 Total: 0.90 kcal Atomic # 14 Polarization: 18.65 SS G_CDS: -5.02 Total: 13.62 kcal Total LS contribution 2.69 Total: 2.69 kcal Total: -30.55 -2.07 -32.62 kcal The number of atoms in the molecule is 18 The average number of expansion shells was 13.00 The maximum number of expansion shells was 13 The minimum number of expansion shells was 13 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000213541737.mol2 18 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.637 kcal (2) G-P(sol) polarization free energy of solvation -30.553 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.084 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.071 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.625 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.012 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.06 seconds