Wall clock time and date at job start Mon Mar 30 2020 02:07:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 O 1.34296 * 127.88631 * 2 1 4 4 N 1.20937 * 109.93551 * 180.02562 * 3 2 1 5 5 N 1.23377 * 113.82813 * 359.74132 * 4 3 2 6 6 C 1.36539 * 108.40321 * 0.41189 * 5 4 3 7 7 C 1.41385 * 128.19802 * 179.88026 * 6 5 4 8 8 H 1.08002 * 120.00221 * 179.68547 * 7 6 5 9 9 C 1.39759 * 119.99986 * 359.40264 * 7 6 5 10 10 N 1.30984 * 119.99859 * 0.27895 * 9 7 6 11 11 Si 1.86803 * 119.99951 * 180.27329 * 9 7 6 12 12 H 1.48496 * 109.47191 * 0.02562 * 11 9 7 13 13 H 1.48503 * 109.46768 * 120.00144 * 11 9 7 14 14 H 1.48498 * 109.47283 * 240.00395 * 11 9 7 15 15 H 1.08998 * 109.47167 * 269.95528 * 1 2 3 16 16 H 1.09001 * 109.47342 * 29.95271 * 1 2 3 17 17 H 1.08997 * 109.47574 * 149.94717 * 1 2 3 18 18 H 0.97005 * 119.99776 * 179.97438 * 10 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.3317 1.0599 0.0000 4 7 3.4822 0.6872 -0.0005 5 7 3.6085 -0.5401 0.0042 6 6 2.3639 -1.1016 -0.0007 7 6 2.0239 -2.4739 -0.0003 8 1 0.9862 -2.7732 0.0005 9 6 3.0306 -3.4433 -0.0070 10 7 4.2892 -3.0804 -0.0081 11 14 2.5813 -5.2565 -0.0143 12 1 1.1033 -5.4002 -0.0122 13 1 3.1391 -5.8997 -1.2310 14 1 3.1444 -5.9108 1.1940 15 1 -0.3633 -0.0008 1.0276 16 1 -0.3634 0.8904 -0.5131 17 1 -0.3634 -0.8895 -0.5146 18 1 4.9879 -3.7532 -0.0124 RHF calculation, no. of doubly occupied orbitals= 27 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000213541737.mol2 18 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:07:14 Heat of formation + Delta-G solvation = 35.568176 kcal Electronic energy + Delta-G solvation = -8045.659892 eV Core-core repulsion = 6272.518178 eV Total energy + Delta-G solvation = -1773.141714 eV No. of doubly occupied orbitals = 27 Molecular weight (most abundant/longest-lived isotopes) = 154.048 amu Computer time = 0.06 seconds Orbital eigenvalues (eV) -45.77737 -36.78792 -35.22907 -33.64403 -29.46031 -27.69415 -24.19137 -22.35556 -19.92506 -18.58942 -17.33268 -16.80346 -15.18375 -14.74341 -13.78877 -13.75220 -13.13201 -13.06754 -12.67970 -12.48739 -12.29969 -11.86344 -11.38602 -11.19916 -9.92821 -8.62977 -6.61373 0.72876 1.40287 1.42227 1.60792 2.00074 2.20997 2.71829 3.20228 4.34171 4.51514 4.72020 4.92515 4.95318 5.20048 5.29501 5.45941 6.11849 6.47588 6.73152 8.34706 8.43654 Molecular weight = 154.05amu Principal moments of inertia in cm(-1) A = 0.086763 B = 0.021025 C = 0.017080 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 322.640298 B = 1331.432440 C = 1638.924786 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.016 4.016 2 C -0.265 4.265 3 O 0.041 5.959 4 N -0.201 5.201 5 N -0.289 5.289 6 C 0.105 3.895 7 C -0.456 4.456 8 H 0.114 0.886 9 C 0.018 3.982 10 N -0.809 5.809 11 Si 1.007 2.993 12 H -0.242 1.242 13 H -0.268 1.268 14 H -0.268 1.268 15 H 0.076 0.924 16 H 0.083 0.917 17 H 0.084 0.916 18 H 0.286 0.714 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.275 -2.509 -0.056 7.696 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C -0.335 4.335 3 O -0.013 6.013 4 N -0.060 5.060 5 N -0.186 5.186 6 C -0.013 4.013 7 C -0.489 4.489 8 H 0.132 0.868 9 C -0.199 4.199 10 N -0.434 5.434 11 Si 0.825 3.175 12 H -0.164 1.164 13 H -0.193 1.193 14 H -0.193 1.193 15 H 0.094 0.906 16 H 0.101 0.899 17 H 0.103 0.897 18 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -5.464 -2.038 -0.056 5.832 hybrid contribution -0.475 -0.683 0.002 0.832 sum -5.939 -2.721 -0.054 6.533 Atomic orbital electron populations 1.19783 0.81023 1.03661 1.02905 1.25736 0.97075 0.83181 1.27523 1.84615 1.13058 1.36668 1.66927 1.76171 1.00434 1.12284 1.17098 1.74680 1.26526 0.98680 1.18701 1.21099 0.85558 0.96815 0.97862 1.19157 0.96058 0.86767 1.46874 0.86816 1.27175 0.93925 1.07415 0.91409 1.70140 1.01697 1.38197 1.33352 0.84792 0.80499 0.73542 0.78626 1.16418 1.19298 1.19289 0.90589 0.89861 0.89695 0.90348 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.02 -0.54 10.37 71.24 0.74 0.20 13 2 C -0.27 -12.92 7.77 26.01 0.20 -12.72 13 3 O 0.04 2.09 11.31 69.17 0.78 2.87 13 4 N -0.20 -11.40 12.95 36.53 0.47 -10.92 13 5 N -0.29 -17.74 10.77 -51.29 -0.55 -18.29 13 6 C 0.11 5.99 6.88 39.51 0.27 6.26 13 7 C -0.46 -24.28 9.33 23.41 0.22 -24.07 13 8 H 0.11 5.34 7.74 -2.91 -0.02 5.32 13 9 C 0.02 0.92 5.49 85.19 0.47 1.39 13 10 N -0.81 -45.47 12.07 21.80 0.26 -45.20 13 11 Si 1.01 37.34 29.56 68.60 2.03 39.37 13 12 H -0.24 -8.17 7.11 99.48 0.71 -7.46 13 13 H -0.27 -9.66 7.11 99.48 0.71 -8.96 13 14 H -0.27 -9.66 7.11 99.48 0.71 -8.96 13 15 H 0.08 2.29 8.14 -2.39 -0.02 2.27 13 16 H 0.08 2.35 8.14 -2.39 -0.02 2.33 13 17 H 0.08 2.70 8.04 -2.39 -0.02 2.69 13 18 H 0.29 14.46 8.30 -92.70 -0.77 13.69 13 Total: -1.00 -66.35 178.21 6.16 -60.19 By element: Atomic # 1 Polarization: -0.35 SS G_CDS: 1.27 Total: 0.92 kcal Atomic # 6 Polarization: -30.84 SS G_CDS: 1.90 Total: -28.94 kcal Atomic # 7 Polarization: -74.60 SS G_CDS: 0.18 Total: -74.42 kcal Atomic # 8 Polarization: 2.09 SS G_CDS: 0.78 Total: 2.87 kcal Atomic # 14 Polarization: 37.34 SS G_CDS: 2.03 Total: 39.37 kcal Total: -66.35 6.16 -60.19 kcal The number of atoms in the molecule is 18 The average number of expansion shells was 13.00 The maximum number of expansion shells was 13 The minimum number of expansion shells was 13 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000213541737.mol2 18 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.758 kcal (2) G-P(sol) polarization free energy of solvation -66.353 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.404 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.164 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.189 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.568 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.06 seconds